[BiO BB] Patterns

[Iddo Friedberg]

Sound like you might need a textbook first.

http://bioinformatics.org/faq/#books

The Chapter 10 in David Mount's book is a good start.

There are several motif databases, but using them depends on what you 
call a "motif", and what is your actual goal is. Anything within the 
range of PRINTS, BLOCKS, Pfam, PROSITE, 3D-motif and I-SITES can be 
applied to your question, at some level. You might also want to look at 
this page:

http://us.expasy.org/tools/#pattern

HTH,

Iddo

Nur'Aini Abdul Rashid wrote:

> Thank  you... how do I go about searching the aticles... any tips...
>
>
>
> ----- Original Message ----- From: "Felipe Albrecht" 
> <felipe.albrecht at gmail.com>
> To: "The general forum at Bioinformatics.Org" 
> <bio_bulletin_board at bioinformatics.org>
> Sent: Thursday, June 16, 2005 8:37 PM
> Subject: Re: [BiO BB] Patterns
>
>
>> Yes, a structure can be represented by varius motifs.
>>
>> A motif represents a structure, but a structure dont nescessaly
>> represents only one motif.  Exist some docs about this, but now I dont
>> know.
>>
>> Felipe Albrecht
>>
>> 2005/6/15, Nur'Aini Abdul Rashid <nuraini at cs.usm.my>:
>>
>>>
>>> Can multiple patterns(motif??) of a protein represents same 
>>> structure or
>>> function. if it does  do a dictionary of this knowledge exist?
>>>
>>>
>>> Nur'Aini binti Abdul Rashid
>>> Pusat Pengajian Sains Komputer
>>> Universiti Sains Malaysia
>>> Pulau Pinang.
>>> _______________________________________________
>>> Bioinformatics.Org general forum  -
>>> BiO_Bulletin_Board at bioinformatics.org
>>> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>>>
>>>
>>>
>> _______________________________________________
>> Bioinformatics.Org general forum  -  
>> BiO_Bulletin_Board at bioinformatics.org
>> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>>
>>
>
> _______________________________________________
> Bioinformatics.Org general forum  -  
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>
>


-- 
Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037 USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 713 9949
http://ffas.ljcrf.edu/~iddo
==========================
The First Automated Protein Function Prediction SIG
Detroit, MI June 24, 2005
http://ffas.burnham.org/AFP