[BiO BB] graph-theory-software

[Dan Bolser]

On Sat, 18 Jun 2005, Iddo Friedberg wrote:

>GraphViz might be what you are looking for. It will mot take a binary
>matrix file as input (well, there is no real standard for those) but you
>can easily convert to GraphViz readable files. Their syntax is very
>simple.
>
>http://www.graphviz.org

My favourite is JUNG (Java Universal Network and Graph Archetecture), but
again you probably have to change your graph format.


>
>HTH,
>
>Iddo
>
>
>--
>Iddo Friedberg, Ph.D.
>The Burnham Institute
>10901 N. Torrey Pines Rd.
>La Jolla, CA 92037, USA
>Tel: +1 (858) 646 3100 x3516
>Fax: +1 (858) 646 3171
>http://ffas.ljcrf.edu/~iddo
>-------------------------------------
>Automated Protein Function Prediction Meeting, June 24, 2005
>http://ffas.burnham.org/AFP
>
>On Sun, 19 Jun 2005, vijaya raj wrote:
>
>> hi
>> i have a binary matrix file, representing a biological network.
>> is there any graph theory software that would allow me to draw the network, taking the binary matrix file as the input...
>> 
>> thanks in advance for sparing your time.
>> 
>> vijayaraj nagarajan
>> department of biological sciences
>> the university of southern mississippi
>> ms, usa
>> 
>> 
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