[BiO BB] Transcription factors prediction

[govind mk]

Hi all

Continuing on the same discussion of transcription
factors ? I would like to know if there is any
database which can give me a list of binding sites for
a given transcription factor.

Refards,
M.K.Govind


--- James Stroud <jstroud at mbi.ucla.edu> wrote:
> Not that it answers your question, but here is a
> critical read on the subject:
> 
> Systematic discovery of regulatory motifs in human
> promoters and 3' UTRs by 
> comparison of several mammals.
> Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V,
> Lindblad-Toh K, Lander ES, 
> Kellis M.
> Nature. 2005 Feb 27; [Epub ahead of print]
> 
>
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15735639
> 
> James
> 
> On Tuesday 08 March 2005 01:50 pm, Andrea
> Franceschini wrote:
> > In   "Nature Biotechnology  23, 137 - 144 
> Published online: 06 January
> > 2005; Assessing computational tools for the
> discovery of transcription
> > factor binding sites"  you can find the unswer to
> your question.
> >
>
http://www.nature.com/cgi-taf/DynaPage.taf?file=/nbt/journal/v23/n1/full/nb
> >t1053.html
> >
> > The suggestion in the article to obtain the best
> results is to analyze your
> > sequences with both these software :
> > Weeder Web:  http://159.149.109.16:8080/weederWeb/
> > Motif Sampler:
>
http://www.esat.kuleuven.ac.be/~thijs/Work/MotifSampler.html
> >
> >
> >
> > Andrea Franceschini
> >
> >
> >
> >
> >
> > ----- Original Message -----
> > From: "Davide Eletto" <deletto at unisa.it>
> > To: "The general forum at Bioinformatics.Org"
> > <bio_bulletin_board at bioinformatics.org>
> > Sent: Tuesday, March 08, 2005 3:35 PM
> > Subject: [BiO BB] Transcription factors prediction
> >
> > > Hi there,
> > > anyone of you could be so kind to give me the
> name of the most common
> > > FREE *Transcription factors prediction *software
> (online, indeed), that
> > > is able to retrieve a list of putative nuclear
> transc fact. by a DNA
> > > sequence?
> > >
> > > Thanks a lot in advance
> > >
> > > davide eletto
> > > ITALIA (one of six nations)
> > > _______________________________________________
> > > Bioinformatics.Org general forum  - 
> > > BiO_Bulletin_Board at bioinformatics.org
> > >
>
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> >
> > _______________________________________________
> > Bioinformatics.Org general forum  - 
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> >
>
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> 
> -- 
> James Stroud, Ph.D.
> UCLA-DOE Institute for Genomics and Proteomics
> Box 951570
> Los Angeles, CA 90095
> _______________________________________________
> Bioinformatics.Org general forum  - 
> BiO_Bulletin_Board at bioinformatics.org
>
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 


	
		
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