[BiO BB] Function Search

[Chris Moy]

Hello All,

I am in the process of trying to mine some of the data to see if there 
is a possible function for a protein of interest. I have  been 
performing PSI-Blast with a whole set of organisms and the process is 
quickly becoming a little overwhelming in terms of trying to make sense 
of all the data. Does anyone have any suggestions about a systematic 
way to get a handle on possible functions for a region of my protein.  
Right now I have limited my search to 300 residues that are just a 
small portion of the protein of interest. Suggestions regarding the use 
of HMMRs and PSSMs are welcome!

Chris



Chris Moy
University of Pennsylvania - Department of Ophthalmology/Genetics
215-898-9838
moyc at mail.med.upenn.edu