[BiO BB] 3rd Integrative Bioinformatics Workshop - REGISTRATION CLOSES TODAY!!
rainer winnenburg (RRes-Roth)
rainer.winnenburg at bbsrc.ac.uk
Mon Aug 14 05:49:00 EDT 2006
*** FINAL CALL FOR PARTICIPATION ***
*** REGISTER FOR WORKSHOP AND BOOK ACCOMMODATION NOW! ***
*** REGISTRATION CLOSES TODAY ***
3rd Integrative Bioinformatics Workshop
September 4-6, 2006
Rothamsted Research, Harpenden, Hertfordshire, United Kingdom http://www.rothamsted.bbsrc.ac.uk/bab/conf/ibiof/
IMPORTANT DATES (please note that the dates have been revised!!!)
August 14: Registration for participation deadline
August 21: Poster submission deadline
INVITED SPEAKERS
Dr Steve Gardner, Chief Technology Officer, Biowisdom, UK
Semantic Integration, SRS and the Meaning of Life (Sciences) Dr Gunaretnam Rajagopal, Deputy Director, Bioinformatics Institute, Singapore
BioComputing at Biopolis - Opening New Frontiers at the Interface of Computing, Biology and Medicine Dr Tom Oinn, Taverna project leader, EBI, UK
Services, Semantics and Workflows in eScience
Prof Pedro Mendes, Virginia Bioinformatics Institute, USA
Top-down Modeling of Biochemical Networks, a Grand Challenge of Systems Biology
PROGRAMME
Monday 4th September 2006
11:30 Registration desk opens
12:30 Lunch (buffet style)
13:10 Welcome followed by some administrivia
Session 1 Database Integration and Integrative Databases
13:20 keynote Semantic Integration, SRS and the Meaning of Life (Sciences)
Steve Gardner (Biowisdom, UK)
14:00 CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction
and Comparison of Transcriptional Regulatory Networks in Prokaryotes
Baumbach, J; Brinkrolf, K; Wittkop, T; Tauch, A; Rahmann, S
14:25 Analysing Microarray Data using the Multi-functional Immune Ontologiser
Khalid, S; Fraser, K; Khan, M; Wang, P; Liu, X; Li, S
14:50 The BioRS(TM) Integration and Retrieval System: An open system for distributed
data integration
Kaps, A; Dyshlevoi, K; Heumann, K; Jost, R; Kontodinas, I; Wolff, M; Hani, J
15:15 Integration of Protein and Protein-Protein Interaction Data: Feasibility
Report using Microsoft .NET
Straßer, W; Siegl, D; Önder, K; Bauer, J
15:40 Coffee break
16:00 BN++ - A Biological Information System
Küntzer, J; Blum, T; Gerasch, A; Backes, C; Hildebrandt, A; Kaufmann, M; Kohlbacher, O;
Lenhof, HP
16:25 MILAN - A medical information-system linking agents to metabolic networks
Prins, B; Hofestädt, R
16:50 Data Cleaning and Semantic Improvement in Biological Databases
Apiletti, D; Bruno, G; Ficarra, E; Baralis, E
17:15 Drinks and Poster Session
18:45 Coach to Holiday Inn Hotel
Tuesday 5th September 2006
09:30 Coach from Holiday Inn Hotel
Session 2 Integrative Systems Biology - Modelling and Simulation
10:00 keynote Top-down Modeling of Biochemical Networks, a Grand Challenge of Systems
Biology
Pedro Mendes (Virginia Bioinformatics Institute, USA)
10:40 BASIS: an internet resource for network modelling
Gillespie, CS; Wilkinson, DJ; Shanley, DP; Proctor, CJ; Boys, RJ; Kirkwood, TBL
11:05 Coffee break
11:20 The implications for Bioinformatics of integration across physical scales
Hodgman, TC; Ugartechea-Chirino, Y; Tansley, G; Dryden, I
11:45 A Graphical Notation to Describe the Logical Interactions of Biological Pathways
Moodie, SL; Sorokin, A; Goryanin, I; Ghazal, P
12:10 Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons
of Simulations' Results
Purutcuoglu, V; Wit, E
12:35 Lunch (buffet style)
Session 3 Integrative Systems Biology - Networks
13:30 keynote BioComputing at Biopolis - Opening New Frontiers at the Interface of Computing,
Biology and Medicine
Gunaretnam Rajagopal (Bioinformatics Institute, Singapore)
14:10 Statistical Embedding in Complex Biosystems
Capobianco, E
14:35 An assessment of machine and statistical learning approaches to inferring
networks of protein-protein interactions
Azuaje, F
14:50 Multi-model inference of network properties from incomplete data
Stumpf, MPH; Thorne, T
15:15 Coffee break
Session 4 Data Analysis and Interpretation - Transcriptomics
15:45 Co-expressed gene groups analysis (CGGA): An automatic tool for the
interpretation of microarray experiments
Martinez, R; Pasquier, N; Collard, M; Lopez, L; Pasquier, C
16:10 Combining biomedical knowledge and transcriptomic data to extract new knowledge
on genes
Guérin, E; Marquet, G; Chabalier, J; Troadec, M-B; Guguen-Guillouzo, C; Loréal, O;
Burgun, A; Moussouni, F
16:35 Inference of Gene Coexpression Networks by Integrative Analysis across
Microarray Experiments
Elo, LL; Lahesmaa, R; Aittokallio, T
17:00 Modelling Microarray Data: Interpreting and communicating the biological
results
Pittelkow, YE; Wilson, SR
17:25 Targeted Projection Pursuit Tool for Gene Expression Visualisation
Faith, J; Brockway, M
17:50 Poster session and Bar opens
19:00 Coach to workshop dinner and Holiday Inn Hotel
22:00 Coach from workshop dinner to Holiday Inn Hotel
19:30 Conference dinner
Wednesday 6th September 2006
09:30 Coach from Holiday Inn Hotel
Session 5 Data Analysis and Interpretation
10:00 keynote Services, Semantics and Workflows in eScience
Tom Oinn (European Bioinformatics Institute, UK)
10:40 Metabolite profiles as a reflection of physiological status - a methodological
validation
Steinfath, M; Repsilber, D; Hische, M; Schauer, N; Fernie, A; Selbig, J
11:05 A First Step towards Learning which uORFs Regulate Gene Expression
Selpi; Bryant, CH; Kemp, GJL; Cvijovic, M
11:30 Coffee break
11:50 Prediction of transcription factor binding to DNA using rule induction methods
Huss, M; Nordström, K
12:15 Functional diversity within protein superfamilies
Casbon, J; Saqi, M
12:40 Closing remarks
12:50 Lunch (buffet style)
Depart
ORGANISING COMMITTEE
Julio Collado-Vides UNAM, Mexico
Ralf Hofestädt Bielefeld University, Germany
Paul Kersey EBI, UK
Jacob Koehler RRes, UK
Chris Rawlings RRes, UK
Uwe Scholz IPK Gatersleben, Germany
Paul Verrier RRes, UK
CONTACT
Karen Morris, BAB Division, Rothamsted Research, West Common, Harpenden, Herts. AL5 2JQ, UK karen.morris at bbsrc.ac.uk
tel: 01582 763133 ext 2813
fax: 01582 467907
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