[BiO BB] Doubt regarding paiwise alignment

[Boris Steipe]

No, you start from the highest score, the alignment is then  
constructed from all pairs of characters that contributed to it.

HTH, Boris





On 15 May 2006, at 04:12, A KUNTHAVAI wrote:

> Hai,
>       I am working in pairwise local alignment . While comparing  
> two sequences
> first I have found all matches.To find the highest similarity I  
> took the matching point as a starting point. I do not know where I   
> should stop. that is starting from the first match whether I have  
> to search the string until last letter in any one of the sequence  
> or is there any other condition to stop.
>
> A.Kunthavai
>
> Why was V. Sehwag warned by the BCCI? Share your knowledge on  
> Yahoo! Answers India
> Send instant messages to your online friends - NOW
> _______________________________________________
> Bioinformatics.Org general forum  -   
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board