[BiO BB] InterProscan XML output error
kannaiah at bsd.uchicago.edu
kannaiah at bsd.uchicago.edu
Tue Nov 14 13:32:36 EST 2006
Hello,
Anybody here use Interproscan anytime?
If so, I am wondering if you ever ran into an error like this: An xml output error.
Not sure whats going wrong here:(. Any ideas?
Thank you.
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[root at cccluster iprscan]# /clusta/shah/local_progs/iprscan/bin/iprscan -cli
-appl hmmsmart -appl hmmpfam -i /clusta/shah/local_progs/iprscan/test.seq -o
/clusta/shah/local_progs/iprscan/test.out
SUBMITTED iprscan-20061114-12101842
FAILED
Iprscan job iprscan-20061114-12101842 failed and exit with status code 256
/clusta/shah/local_progs/iprscan/bin/iprscan:
/clusta/shah/local_progs/iprscan/tmp/20061114/iprscan-20061114-12101842/iprscan-20061114-12101842.xml
unavailable : No such file or directory
/clusta/shah/local_progs/iprscan/bin/iprscan_wrapper.pl: failed to send error to
administrator: no destination address
Tool: iprscan
JobID: iprscan-20061114-12101842
Time: Tue Nov 14 12:11:37 2006
Error:
supervise: doRawResults: failed to create XML output :
Job submission parameters:
DD 14
MM 11
YYYY 2006
appl hmmsmart,hmmpfam
cmd submit
crc 1
format xml
frame 6
hh 12
jobid iprscan-20061114-12101842
mm 10
nseqs 3
onego 1
remotehost cccluster.uchicago.cc
seq.1.1.crc64 F94D07049A6D489D
seq.1.1.id RS16_ECOLI
seq.1.1.len 82
seq.1.2.crc64 D44DAE8C544CB7C1
seq.1.2.id Q9RHD9
seq.1.2.len 267
seq.1.3.crc64 CD84A335CCFFE6D7
seq.1.3.id Y902_MYCTU
seq.1.3.len 446
seqtype P
srchtype interactive
ss 18
submission cli
tool iprscan
NOTE: the newlines have been replaced with backslash.
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