[BiO BB] Smith-Waterman on FPGA
Nur'Aini Abd.Rashid
nuraini at cs.usm.my
Tue Oct 17 20:46:26 EDT 2006
Look at work by Liao h.Y et. al (2004)
On Mon, 16 Oct 2006, Deepan
Chakravarthy wrote:
> Date: Mon, 16 Oct 2006 22:26:19 +0530
> From: Deepan Chakravarthy <codeshepherd at gmail.com>
> Reply-To: General Forum at Bioinformatics.Org
> <bio_bulletin_board at bioinformatics.org>
> To: General Forum at Bioinformatics.Org
> <bio_bulletin_board at bioinformatics.org>
> Cc: anand at novaglobal.com.sg, henny at novaglobal.com.sg, ivanho at novaglobal.com.sg
> Subject: [BiO BB] Smith-Waterman on FPGA
>
> Hello,
> I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com
>
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