[BiO BB] How to rank active site(s) ?

[Kalidas Yeturu]

Hi Shameer,
 There are many ways of ranking binding sites..
 (1) Size
 (2) Cumulative electro static potential of probe positions in the site
 (3) Occurance of most possible binding site residues
 etc.,
 Please refer to :CASTp, Q-SiteFinder, LigsiteCSC algorithms..

With Regards
Kalidas. Y


On 7/20/07, Shameer Khadar <skhadar at gmail.com> wrote:
>
> Dear All,
>
> Is there any computational tool/protocol available to rank active site(s)
> present in a protein. I am looking in to a couple of proteins which have
> multiple site (say active site / binding sites ), I am looking for a
> method
> to rank binding/Active sites. I have done with an extended google search.
> I
> couldnt find anything as such. I would appreciate if any one can point me
> to
> any  similar work / paper / tool etc .
>
> Many thanks in advance,
> Shameer Khadar
> NCBS-TIFR
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-- 
Kalidas Y
http://ssl.serc.iisc.ernet.in/~kalidas