[BiO BB] sequence clustering

[Paulo Nuin]

You can also try CDHit-est.

Paulo


Martin Gollery wrote:
> There are many programs for clustering ESTs or other nucleic
> sequences. Try blastclust, D2 or Cap3 for starters.
>
> Martin Gollery
>
> On Wed, Dec 3, 2008 at 1:18 AM, T Joshi <tejalonline at gmail.com> wrote:
>   
>> Hi,
>> I would like to know if there are any tools/software for clustering
>> DNA sequences. I searched for them, but mostly I ended up with those
>> which work on protein sequences.  If there is any bioconductor package
>> which also could work with sequence data, it would be good to know.
>>
>> Thanks
>> Josh
>>
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