[BiO BB] information on domains

[Oliviero Carugo]

Dear Gurunath,

unfortunately the definition of "domain" is rather ambiguous. You might
try the SCOP and CATH databases (which have different domain boundary
definitions).

Good luck,

Oliviero


On Fri, February 5, 2010 06:04, gurunath katagi wrote:
> Dear all,
> I wanted to make a dataset of proteins with single domains .
> I wanted to know is there any way that i can get the info. on no. of
> structural domains given a PDB ID or scop id ? (set of PDB ids)
>
> I tried both with PDB and SCOP and i was not successful ?
> Can any body help me regarding this ?
>
> Thank you
> Gurunath
>
> --
> Gurunath M Katagi
> Graduate Research Student
> Bio molecular computation Laboratory
> Supercomputer Education & Research Center
> Indian Institute Of Science, Bangalore- 560012
> Karnataka State, India
> Phone:080-22932737-319,080-22933061
> email: gurunath at rishi.serc.iisc.ernet.in
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