[Bio-linux-dev] [Bio-Linux] How to Install all packages on Ubuntu?

[Tony Travis]

On 14/02/14 12:51, Jasmine Lognnes wrote:
> Dear Jan,
>
> The script added those for me, but looking at the repos in a browser,
> I can't see the bio-linux-assembly-conversion-tools in any of the
> repos. apt-cache search bio-linux | assembly doesn't give any hits
> either.

Hi, Jasmine.

I guess you meant to pipe the output through "fgrep":

> ajt at beluga:~$ apt-cache search bio-linux | fgrep assembly
> bio-linux-assembly-conversion-tools - Conversion tools for handling 454 assemblies.
> bio-linux-lucy - Preparation of raw DNA sequence fragments for sequence assembly.

HTH,

  Tony.

--
Dr. A.J.Travis, University of Aberdeen, Institute of Biological and
Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen
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