[Bio-linux-devel] [Bio-linux-list] Future of Bio-Linux (BL 9 & Ubuntu 16.04) ?

[Tony Travis]

On 21/01/16 09:44, Tim Booth wrote:
> ...continued from post to bio-linux-list
>
> Regarding the upgrade script, yes please contribute fixes!
>
> There's no need to go ferreting around to find the code, as it's all on
> GitHub.  Fork it, patch it, test it, submit bugs, send pull requests,
> etc.  It's all good!
>
> https://github.com/environmentalomics/build-bio-linux/tree/master/upgrade_to_8

Hi, Tim.

OK - I've raised an issue on GitHub and submitted this patch:

--- upgrade_to_8.sh.old 2016-01-21 10:58:26.679395436 +0000
+++ upgrade_to_8.sh     2016-01-21 11:00:12.383392313 +0000
@@ -239,8 +239,8 @@

 # If this was run on a Vanilla Ubuntu 14.04 box then
Universe/Multiverse sources
 # will not be active.  Tell the user about it.
-if grep -q '^deb .*/ [a-z ]\+ universe$'   /etc/apt/sources.list && \
-   grep -q '^deb .*/ [a-z ]\+ multiverse$' /etc/apt/sources.list ; then
+if grep -qw universe   /etc/apt/sources.list && \
+   grep -qw multiverse /etc/apt/sources.list ; then
     true
 else
     echo "**** Warning:"

> Note that I don't any longer have access to the nebc.nerc.ac.uk server
> that hosts some of the Bio-Linux static files like this script, but I
> can edit content on environmentalomis.org and I have full control of the
> Luanchpad and GitHub accounts.

Is someone at NERC/EOS taking over responsibility for Bio-Linux?

Bye,

  Tony.

--
Dr. A.J.Travis, University of Aberdeen, Institute of Biological and
Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen
AB24 3UU, Scotland, UK. tel +44(0)1224 272700, fax +44 (0)1224 272 396
http://www.abdn.ac.uk, mailto:tony.travis at abdn.ac.uk, skype:ajtravis


The University of Aberdeen is a charity registered in Scotland, No SC013683.
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