From rkrenn at phoenixctms.org  Fri May 18 18:19:43 2018
From: rkrenn at phoenixctms.org (Rene Krenn)
Date: Sat, 19 May 2018 00:19:43 +0200
Subject: [Bio-linux-devel] phoenix clinical trial management system
	integration
Message-ID: <004e01d3eef6$52bed540$f83c7fc0$@phoenixctms.org>

hello,

 

would like to probe if there is an interest to include
https://github.com/phoenixctms ?

it's the most powerful EDC system we know.

 

pls let me know if it makes sense and someone can/wants to help with
packaging.

 

regards, rene

 

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From tony.travis at abdn.ac.uk  Sat May 19 09:56:18 2018
From: tony.travis at abdn.ac.uk (Tony Travis)
Date: Sat, 19 May 2018 14:56:18 +0100
Subject: [Bio-linux-devel] phoenix clinical trial management system
 integration
In-Reply-To: <004e01d3eef6$52bed540$f83c7fc0$@phoenixctms.org>
References: <004e01d3eef6$52bed540$f83c7fc0$@phoenixctms.org>
Message-ID: <b73ecd9e-1922-2f5a-b035-775115f47652@abdn.ac.uk>

On 18/05/18 23:19, Rene Krenn wrote:
> hello,
>
>
>
> would like to probe if there is an interest to include
> https://github.com/phoenixctms ?
>
> it?s the most powerful EDC system we know.
>
>
>
> pls let me know if it makes sense and someone can/wants to help with
> packaging.

Hi, Rene.

Bio-Linux is a platform for bioinformatics, rather than collecting and
analysing clinical trials data. However, many packages from Debian-Med
are included in Bio-Linux and the two projects work together to avoid
duplication of effort packaging the same bioinformatics software.

The Debian-Med project is much broader than Bio-Linux and specifically
includes biomedical applications like your clinical trials management
software. I've CC'ed your message to the Debian-Med mailing list so we
can discuss the possibility of packaging your software there.

Please post a message to the Debian-Med list explaining clearly what the
licence is for your software and what, exactly, you want to package.

Thanks,

  Tony.

--
Dr. A.J.Travis, University of Aberdeen, Institute of Biological and
Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen
AB24 3UU, Scotland, UK. tel +44(0)1224 272700, fax +44 (0)1224 272 396
http://www.abdn.ac.uk, mailto:tony.travis at abdn.ac.uk, skype:ajtravis


The University of Aberdeen is a charity registered in Scotland, No SC013683.
Tha Oilthigh Obar Dheathain na charthannas cl?raichte ann an Alba, ?ir. SC013683.

From rkrenn at phoenixctms.org  Tue May 22 03:13:45 2018
From: rkrenn at phoenixctms.org (Rene Krenn)
Date: Tue, 22 May 2018 09:13:45 +0200
Subject: [Bio-linux-devel] phoenix clinical trial management system
	integration
In-Reply-To: <20180522060135.7nw57mg56nmbpuu2@an3as.eu>
References: <004e01d3eef6$52bed540$f83c7fc0$@phoenixctms.org>
	<b73ecd9e-1922-2f5a-b035-775115f47652@abdn.ac.uk>
	<20180522060135.7nw57mg56nmbpuu2@an3as.eu>
Message-ID: <000401d3f19c$6c697880$453c6980$@phoenixctms.org>

Hi,

thx all for re;

ok regarding packaging, jfyi this is the script to get (and build) it on a minimal debian 9.4 (or ubuntu 16.04):
https://github.com/phoenixctms/install-debian/blob/master/install.sh

To get rid of outdated dependencies, we already moved on to OpenJDK8 successfully last week.
The next task will be to ensure it works with more recent versions of tomcat.

The perl-based ETL framework (https://github.com/phoenixctms/bulk-processor ) should most likely become a separate
package. So i suggest there should be one package for the main tomcat webapp, and one for the bulk-processor.
Another optional one would be the public subject signup portal, which is a perl dancer webapp.

regards, rene

-----Urspr?ngliche Nachricht-----
Von: Andreas Tille [mailto:andreas at an3as.eu] 
Gesendet: Dienstag, 22. Mai 2018 08:02
An: Tony Travis <tony.travis at abdn.ac.uk>
Cc: bio-linux-devel at bioinformatics.org; Debian Med Project List <debian-med at lists.debian.org>; rkrenn at phoenixctms.org
Betreff: Re: [Bio-linux-devel] phoenix clinical trial management system integration

Hi,

@Tony: Thanks a lot for forwarding this. :-)

On Sat, May 19, 2018 at 02:56:18PM +0100, Tony Travis wrote:
> On 18/05/18 23:19, Rene Krenn wrote:
> > hello,
> >
> >
> >
> > would like to probe if there is an interest to include 
> > https://github.com/phoenixctms ?
> >
> > it?s the most powerful EDC system we know.
> >
> >
> >
> > pls let me know if it makes sense and someone can/wants to help with 
> > packaging.

For sure we would love to help you in packaging.  We have quite some record in teaching upstream how to package.  We have formalised this process in so called "Mentoring of the Month" (MoM)[1].  You are more than welcome to add yourself to the list of students (or simply confirm here on this list[2] if you are scared by just another random Wiki login in the web.  However, you should subscribe in any case this list since the mentoring is done in public.)
 
> Hi, Rene.
> 
> Bio-Linux is a platform for bioinformatics, rather than collecting and 
> analysing clinical trials data.

It looks like a good target for the task "Research"[3] which has no existing package yet which is a real shame - but may be you consider other of our tasks[4] fitting better / in addition.

> However, many packages from Debian-Med are included in Bio-Linux and 
> the two projects work together to avoid duplication of effort 
> packaging the same bioinformatics software.
> 
> The Debian-Med project is much broader than Bio-Linux and specifically 
> includes biomedical applications like your clinical trials management 
> software. I've CC'ed your message to the Debian-Med mailing list so we 
> can discuss the possibility of packaging your software there.
> 
> Please post a message to the Debian-Med list explaining clearly what 
> the licence is for your software and what, exactly, you want to package.

Nothing to add to Tony's kid explanation.

Kind regards

        Andreas.

[1] https://wiki.debian.org/DebianMed/MoM
[2] https://lists.debian.org/debian-med
[3] https://blends.debian.org/med/tasks/research
[4] https://blends.debian.org/med/tasks

--
http://fam-tille.de