[BioBrew Users] Biobrew roll

[Glen Otero]

On Aug 30, 2004, at 4:41 PM, Humberto Ortiz Zuazaga wrote:

> Glen Otero <gotero at linuxprophet.com> wrote:
>
>> Sweet! What's proml? Is it something we can add into BioBrew?
>
> Maybe, it's part of the phylip package:
>
> http://evolution.genetics.washington.edu/phylip/doc/proml.html
>
> The license prohibits redistribution for profit:
>
> The following copyright notice is intended to cover all source code, 
> all
> documentation, and all executable programs of the PHYLIP package.
>
>  Copyright 1980-2004. University of Washington and Joseph
>  Felsenstein. All rights reserved. Permission is granted to reproduce,
>  perform, and modify these programs and documentation files. Permission
>  is granted to distribute or provide access to these programs provided
>  that this copyright notice is not removed, the programs are not
>  integrated with or called by any product or service that generates
>  revenue, and that your distribution of these documentation files and
>  programs are free. Any modified versions of these materials that are
>  distributed or accessible shall indicate that they are based on these
>  program. Institutions of higher education are granted permission to
>  distribute this material to their students and staff for a fee to
>  recover distribution costs. Permission requests for any other
>  distribution of this program should be directed to license @
>  u.washington.edu .
>
> There are source and binary rpms for RedHat 9 and Fedora liked to from
> the main phylip site:
>
> http://www.biolinux.org/phylip.html
>
> There is also an embassy package (EMBOSS interface) for some of the
> phylip programs.

PHYLIP and EMBOSS are already included in BioBrew. Are they not there 
on the roll?
>
> I just built the RPMS from the SRPMS, so if you can't include it,
> perhaps I can host the binaries here.
>
> --
> Humberto Ortiz Zuazaga
> Programmer-Archaeologist
> High Performance Computing facility
> University of Puerto Rico
> http://www.hpcf.upr.edu/~humberto/
>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772