[BioBrew Users] Biobrew modules.
Humberto Ortiz Zuazaga
humberto at hpcf.upr.edu
Tue Mar 1 11:49:19 EST 2005
There's something still broken with modules on the BioBrew 3.3 roll.
$ module avail
--------------------------- /opt/BioBrew/modulefiles
---------------------------
ClustalW/1.8.3-1 HMMER/2.3.2-pvm gromacs/3.2.1-1
Fasta/3.4-1 NCBI/6.1.0-2 wise/2.2.0-1
$ module add NCBI/6.1.0-2
$ module list
Currently Loaded Modulefiles:
1) NCBI/6.1.0-2
$ blast
-bash: blast: command not found
$ echo $PATH
/opt/BioBrew/NCBI/6.1.0-2/bin:/opt/gridengine/bin/glinux:/opt/BioBrew/mrbayes/3
.0/bin:/usr/kerberos/bin:/opt/FarmTools/fbsng/bin:/usr/local/bin:/bin:/usr/bin:
/usr/X11R6/bin:/opt/ganglia/bin:/usr/java/j2sdk1.4.2_04/bin:/opt/rocks/bin:/opt
/rocks/sbin:/home/humberto/bin
But the actual location of blast is
/opt/BioBrew/NCBI/6.1.0/bin/blast
So the module is incorrectly adding the rpm version number into the path.
More information about the BioBrew-Users
mailing list