[Bioclusters] Re: Request for discussions-How to build a biocluster Part 6 (Misc.)

[Ognen Duzlevski]

Hello,
 
Sylvain Foisy <foisys@mac.com> wrote:

>>OTHER SOFTWARES
>>Besides BLAST, what other bioinfo software are known
>>to work in cluster 
>>config? I would imagine that FASTA, the HMMER suite
>>and any software 
>>that work in embarrassingly parallel fashion will.
>>Anybody has 
>>experience running multi-softwarer clusters?

Check http://bioinfo.pbi.nrc.ca/clustalw-smp/

They have put source code of a multi-threaded version
of clustalw online. Maybe it can be made to work on a
cluster.

dbm

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