> Hi Jeremy, > I have been running a wwwblast server for more than a year now. Here is > what you need to add in blast.rc. > blastn dna files > blastp protein files > blastx protein files > tblastn dna files > tblastx dna files > > The rest is quite simple but let us know if you have any more problems? Just a couple more questions..... Another researcher looked over the installation and did a couple BLAST runs. According to him, the blast that comes with wwwblast is pretty old and the databases are formatted to what NCBI used 5 years ago. Does NCBI use the same databases as what they release to us? If the database continues to be a problem, we also have the complete GCG database available. Since BLAST wants its database in its own format, how hard would it be to take the flat files from Genbank, format to FASTA, then format to NCBI (using formatdb)? Or is this even possible? -- Jeremy Mann jeremy@biochem.uthscsa.edu University of Texas Health Science Center Bioinformatics Core Facility Phone: (210) 567-2672