> >>Note: For some reason, I seem to remember needing to put a >>"Data=/path/to/scoring/matrices" as the third line in mpiblast.conf. I >> make sure this is a shared path. >> > I put that in there as the 3rd line, it worked, but then I removed it > and it still works. Not sure what is going on, but it seems to find the > PAM matrices now. Can anybody else here testify as to whether they put > it in the > last line of mpiblast.conf? Since 1.1.0 I haven't had to put anything on the 3rd line. It still works for me. -- Jeremy Mann jeremy@biochem.uthscsa.edu University of Texas Health Science Center Bioinformatics Core Facility http://www.bioinformatics.uthscsa.edu Phone: (210) 567-2672