Greenseid, Joseph M. wrote: > Hi all, > > I am pretty new to the bioinformatics arena of high performance > computing. I am a computer guy, who has done HPC in areas like CFD, > Earth/Space sciences, stuff like that. > > I have been asked to investigate bioinformatics (as in put together a > system and team up with a computational biologist to do some work on > it), and I have a system that I would like to play around with, but I > was wondering if there were any useful benchmarks that I could run > that would mean something to someone in this field if they saw the > results -- something akin to HPL or HPCC for traditional > supercomputing numbers. Hi Joe There are a few serious efforts in this area: BBSv3 is the one we built (http://scalableinformatics.com/bbs) in use by a few hardware vendors to test/market their products, and biobench (http://www.ece.umd.edu/biobench/), and bioperf (http://www.bioperf.org/). Joe -- Joseph Landman, Ph.D Founder and CEO Scalable Informatics LLC, email: landman at scalableinformatics.com web : http://www.scalableinformatics.com phone: +1 734 786 8423 fax : +1 734 786 8452 or +1 866 888 3112 cell : +1 734 612 4615