[Biococoa-dev] more ramblings

[Koen van der Drift]

On Dec 3, 2004, at 5:08 PM, John Timmer wrote:

> Strict and unambiguous would be the same - all symbols represent a 
> single
> entity.  SkippingNonBases isn't - that's what the "undefined" 
> character is
> for.  It is used when a character doesn't represent a symbol, 
> ambiguous or
> otherwise.
>

So is it safe to say that gap and undefined are actually just 
BCSymbols, not AA or base? In that case we can move their 
representations to BCSymbosl and make a general undefined/gap 
symbolset.


- Koen.