[Biococoa-dev] more ramblings

[Koen van der Drift]

Not, quite, because the plist entry is different for both. Also the 
undefined AA has its own 3-letter code (Xaa). I need to think how I can 
solve this, if needed at all. BCsymbolSet now has 2 empty methods: 
unknownAndGapSymbolSet and unknownSymbolSet. Do we need these? If yes, 
we do need the neutral BCSymbol version of these two. If no, I will 
just remove them.

- Koen.


On Dec 3, 2004, at 9:02 PM, Alexander Griekspoor wrote:

> Then it's fine, great!
>
> Op 4-dec-04 om 2:57 heeft Koen van der Drift het volgende geschreven:
>
>>
>> On Dec 3, 2004, at 8:52 PM, Alexander Griekspoor wrote:
>>
>>> Oops, I just thought of one small problem, an undefined symbol has a 
>>> different letter assigned in the DNA (N) vs the protein world (*). 
>>> Is this indeed a problem or is the undefined symbol different from 
>>> the "every aminoacid/ every base" symbol?
>>>
>>
>> Actually, they both use the '?' symbol for undefined.  The '*' is the 
>> stop amino acid and 'N' in the bases plist is named anyBase.
>>
>> - Koen.
>>
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>>
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