[Biococoa-dev] Even more on sequence formats
Alexander Griekspoor
a.griekspoor at nki.nl
Tue Apr 11 18:19:48 EDT 2006
Hi Koen,
The format is explained in detail on this page I happened to
encounter: http://www.mekentosj.com/enzymex
I copied the relevant part below:
Another sequence format?
Not really. The files EnzymeX creates look like normal files, but
right-click and open their contents and you will see that they
consist of a simple FASTA file and a file in which EnzymeX stores its
preferences. Send a file to someone who doesn't have EnzymeX or to a
Windows user and they will simply see a folder with a FASTA file. No
problem! If you have any questions about the exDNA file "format",
don't hesitate to contact us.
Hope that helps..
Cheers,
Alex
Ps. The binary file reading is being tested on an intel based mac as
we speak, turned out that I had it done already but mixed up Big
(PPC) and Little (Endian) in my first attempt to fix the problem
yesterday...
On 12-apr-2006, at 0:09, Koen van der Drift wrote:
>
> On Apr 11, 2006, at 1:04 PM, Charles Parnot wrote:
>
>> Just a quick email to remind you guys that BioCocoa should support
>> all formats, even the most obscure, and this is why it should also
>> be able to read "exdna" files. I don't know if you heard of that
>> format?
>
> Can you point me to a site where that format is explained? Alex
> already provided some code to deal with such files, but I couldn't
> find any format info.
>
> thanks,
>
> - Koen.
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** Alexander Griekspoor **
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The Netherlands Cancer Institute
Department of Tumorbiology (H4)
Plesmanlaan 121, 1066 CX, Amsterdam
Tel: + 31 20 - 512 2023
Fax: + 31 20 - 512 2029
AIM: mekentosj at mac.com
E-mail: a.griekspoor at nki.nl
Web: http://www.mekentosj.com
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