[Biococoa-dev] BioCocoa linux install
Scott Christley
schristley at mac.com
Wed Mar 26 14:40:07 EDT 2008
Your GNUstep environment is likely not setup properly in that
terminal window. It should have added the appropriate paths to the
LD_LIBRARY_PATH environment variable so that it finds the shared
libraries. Alternatively you can manually add /usr/local/GNUstep/
Local/Library/Libraries to your LD_LIBRARY_PATH environment variable,
but I don't recommend do it manually because there are other settings
required which may cause things to fail unexpectedly.
cheers
Scott
On Mar 26, 2008, at 1:24 PM, paolo siniselli wrote:
> Ok, I installed BioCocoa 2 and ultraconserved tools
> witho no errors
> But now, when I try to use construct_sarray I get this
> error:
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/
> trunk/shared_obj#
> ls
> construct_sarray intersect_mcp.d mcp_sarray.o
> print_sarray trim_mcp.d union_mcp.o
> construct_sarray.d intersect_mcp.o print_mcp
> print_sarray.d trim_mcp.o
> construct_sarray.o mcp_sarray print_mcp.d
> print_sarray.o union_mcp
> intersect_mcp mcp_sarray.d print_mcp.o
> trim_mcp union_mcp.d
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/
> trunk/shared_obj#
> ./construct_sarray /home/paolo/S_Cerevisae\
> Genome/chr1.fa
> ./construct_sarray: error while loading shared
> libraries: libBioCocoa.so.0: cannot open shared object
> file: No such file or directory
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/
> trunk/shared_obj#
> locate libBioCocoa.so.0
> /home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/
> libBioCocoa.so.0
> /home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/
> libBioCocoa.so.0.0.1
> /usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/
> Versions/A/libBioCocoa.so.0
> /usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/
> Versions/A/libBioCocoa.so.0.0.1
> /usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0
> /usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0.0.1
>
> Any suggestions?
> Thank for your help
> Paolo
>
>
>
> --- Scott Christley <schristley at mac.com> wrote:
>
>
>> ... "make install",
>> that will compile
>> and install the BioCocoa library. Then you should
>> be able to "make"
>> the Ultraconserved project.
>>
>> cheers
>> Scott
> R
>
>
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