From koenvanderdrift at gmail.com Tue Oct 15 07:15:07 2013 From: koenvanderdrift at gmail.com (Koen van der Drift) Date: Tue, 15 Oct 2013 07:15:07 -0400 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa Message-ID: Hi all, A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. You can find it at http://indigestionapp.com. Cheers, - Koen. From schristley at mac.com Tue Oct 15 12:13:47 2013 From: schristley at mac.com (Scott Christley) Date: Tue, 15 Oct 2013 11:13:47 -0500 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References: Message-ID: Hi Koen, That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. cheers Scott On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: > Hi all, > > A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. > > I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. > > You can find it at http://indigestionapp.com. > > > Cheers, > > - Koen. > _______________________________________________ > Biococoa-dev mailing list > Biococoa-dev at bioinformatics.org > http://www.bioinformatics.org/mailman/listinfo/biococoa-dev From koenvanderdrift at gmail.com Tue Oct 15 14:09:02 2013 From: koenvanderdrift at gmail.com (Koen van der Drift) Date: Tue, 15 Oct 2013 14:09:02 -0400 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References:

Message-ID: <7998623C-859A-4982-B147-64B551AB6926@gmail.com> Hi Scott, To be honest, I didn't make notes when I was adapting the framework, but I do remember there wasn't much I had to do. I did update some parts to Objective-C 2.0, e.g. fast enumeration. I didn't want to completely rewrite it, so it is just an adaptation. If you can add it to the repository, that would be great, I'm always struggling with getting access with bioinformatics.org. I'll send you a separate email with the project off-list. It would be great if we could move to github or google code one of these days... Cheers, - Koen. On Oct 15, 2013, at 12:13 PM, Scott Christley wrote: > Hi Koen, > > That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. > > cheers > Scott > > On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: > >> Hi all, >> >> A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. >> >> I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. >> >> You can find it at http://indigestionapp.com. >> >> >> Cheers, >> >> - Koen. >> _______________________________________________ >> Biococoa-dev mailing list >> Biococoa-dev at bioinformatics.org >> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev > From charles.parnot at gmail.com Tue Oct 15 14:10:57 2013 From: charles.parnot at gmail.com (Charles Parnot) Date: Tue, 15 Oct 2013 20:10:57 +0200 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References: Message-ID: This is great, Koen! Thanks for sharing. The screenshots look very nice too :-) Charles On Oct 15, 2013, at 1:15 PM, Koen van der Drift wrote: > Hi all, > > A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. > > I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. > > You can find it at http://indigestionapp.com. > > > Cheers, > > - Koen. > _______________________________________________ > Biococoa-dev mailing list > Biococoa-dev at bioinformatics.org > http://www.bioinformatics.org/mailman/listinfo/biococoa-dev -- Charles Parnot charles.parnot at gmail.com http://app.net/cparnot twitter: @cparnot From koenvanderdrift at gmail.com Tue Oct 15 21:30:33 2013 From: koenvanderdrift at gmail.com (Koen van der Drift) Date: Tue, 15 Oct 2013 21:30:33 -0400 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References:

<7998623C-859A-4982-B147-64B551AB6926@gmail.com> Message-ID: Thanks for the offer, Craig. I'm replying back to the mailing list so everyone can chime in. I think at the moment Scott is the one who uses the repository the most, so let's see what he thinks about moving it to git. - Koen. On Oct 15, 2013, at 6:50 PM, Craig Bateman wrote: > You know, I never did contribute a whole lot to this project, and at some point I couldn't even get it to compile because I was a few too many api versions beyond what it was written for. > > BUT, I do know github, inside and out. If moving the repository over there is desired, I could take that up for y'all... > > > On Tue, Oct 15, 2013 at 11:09 AM, Koen van der Drift wrote: > Hi Scott, > > To be honest, I didn't make notes when I was adapting the framework, but I do remember there wasn't much I had to do. I did update some parts to Objective-C 2.0, e.g. fast enumeration. I didn't want to completely rewrite it, so it is just an adaptation. If you can add it to the repository, that would be great, I'm always struggling with getting access with bioinformatics.org. I'll send you a separate email with the project off-list. > > It would be great if we could move to github or google code one of these days... > > Cheers, > > - Koen. > > > > On Oct 15, 2013, at 12:13 PM, Scott Christley wrote: > > > Hi Koen, > > > > That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. > > > > cheers > > Scott > > > > On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: > > > >> Hi all, > >> > >> A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. > >> > >> I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. > >> > >> You can find it at http://indigestionapp.com. > >> > >> > >> Cheers, > >> > >> - Koen. > >> _______________________________________________ > >> Biococoa-dev mailing list > >> Biococoa-dev at bioinformatics.org > >> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev > > > > _______________________________________________ > Biococoa-dev mailing list > Biococoa-dev at bioinformatics.org > http://www.bioinformatics.org/mailman/listinfo/biococoa-dev > > > From koenvanderdrift at gmail.com Thu Oct 17 07:39:51 2013 From: koenvanderdrift at gmail.com (Koen van der Drift) Date: Thu, 17 Oct 2013 07:39:51 -0400 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References:

Message-ID: Thanks guys! - Koen. On Oct 16, 2013, at 7:17 PM, Alexander Griekspoor wrote: >> This is great, Koen! Thanks for sharing. The screenshots look very nice too :-) >> Charles > > Agreed! > Alex > > > From schristley at mac.com Thu Oct 17 13:50:06 2013 From: schristley at mac.com (Scott Christley) Date: Thu, 17 Oct 2013 12:50:06 -0500 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: <7998623C-859A-4982-B147-64B551AB6926@gmail.com> References:

<7998623C-859A-4982-B147-64B551AB6926@gmail.com> Message-ID: <788C0667-F5F3-41CB-82B3-4235F635AF6E@mac.com> Hi all, Koen's port of some of the BioCocoa classes to iOS is now in the source repository. Thanks Koen! You can find it under BioCocoa/branches/BioCocoa_Touch. I haven't analyzed the differences but at least we have the code available so that analysis can be easily done at a later date. Scott On Oct 15, 2013, at 1:09 PM, Koen van der Drift wrote: > Hi Scott, > > To be honest, I didn't make notes when I was adapting the framework, but I do remember there wasn't much I had to do. I did update some parts to Objective-C 2.0, e.g. fast enumeration. I didn't want to completely rewrite it, so it is just an adaptation. If you can add it to the repository, that would be great, I'm always struggling with getting access with bioinformatics.org. I'll send you a separate email with the project off-list. > > It would be great if we could move to github or google code one of these days... > > Cheers, > > - Koen. > > > > On Oct 15, 2013, at 12:13 PM, Scott Christley wrote: > >> Hi Koen, >> >> That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. >> >> cheers >> Scott >> >> On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: >> >>> Hi all, >>> >>> A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. >>> >>> I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. >>> >>> You can find it at http://indigestionapp.com. >>> >>> >>> Cheers, >>> >>> - Koen. >>> _______________________________________________ >>> Biococoa-dev mailing list >>> Biococoa-dev at bioinformatics.org >>> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev >> > From koenvanderdrift at gmail.com Thu Oct 17 14:10:40 2013 From: koenvanderdrift at gmail.com (Koen van der Drift) Date: Thu, 17 Oct 2013 14:10:40 -0400 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: <788C0667-F5F3-41CB-82B3-4235F635AF6E@mac.com> References:

<7998623C-859A-4982-B147-64B551AB6926@gmail.com> <788C0667-F5F3-41CB-82B3-4235F635AF6E@mac.com> Message-ID: Thanks for adding this Scott. What are your thoughts on moving the repository to github? - Koen. On Oct 17, 2013, at 1:50 PM, Scott Christley wrote: > Hi all, > > Koen's port of some of the BioCocoa classes to iOS is now in the source repository. Thanks Koen! You can find it under BioCocoa/branches/BioCocoa_Touch. I haven't analyzed the differences but at least we have the code available so that analysis can be easily done at a later date. > > Scott > > On Oct 15, 2013, at 1:09 PM, Koen van der Drift wrote: > >> Hi Scott, >> >> To be honest, I didn't make notes when I was adapting the framework, but I do remember there wasn't much I had to do. I did update some parts to Objective-C 2.0, e.g. fast enumeration. I didn't want to completely rewrite it, so it is just an adaptation. If you can add it to the repository, that would be great, I'm always struggling with getting access with bioinformatics.org. I'll send you a separate email with the project off-list. >> >> It would be great if we could move to github or google code one of these days... >> >> Cheers, >> >> - Koen. >> >> >> >> On Oct 15, 2013, at 12:13 PM, Scott Christley wrote: >> >>> Hi Koen, >>> >>> That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. >>> >>> cheers >>> Scott >>> >>> On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: >>> >>>> Hi all, >>>> >>>> A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. >>>> >>>> I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. >>>> >>>> You can find it at http://indigestionapp.com. >>>> >>>> >>>> Cheers, >>>> >>>> - Koen. >>>> _______________________________________________ >>>> Biococoa-dev mailing list >>>> Biococoa-dev at bioinformatics.org >>>> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev >>> >> > > _______________________________________________ > Biococoa-dev mailing list > Biococoa-dev at bioinformatics.org > http://www.bioinformatics.org/mailman/listinfo/biococoa-dev From schristley at mac.com Thu Oct 17 16:21:11 2013 From: schristley at mac.com (Scott Christley) Date: Thu, 17 Oct 2013 15:21:11 -0500 Subject: [Biococoa-dev] ANN: new iOS app which uses BioCocoa In-Reply-To: References:

<7998623C-859A-4982-B147-64B551AB6926@gmail.com> <788C0667-F5F3-41CB-82B3-4235F635AF6E@mac.com> Message-ID: <2673EAB1-AC87-4863-8718-604A87BFDA52@mac.com> No thoughts really. I use subversions on a daily basis so I don't think about other repository systems much. Scott On Oct 17, 2013, at 1:10 PM, Koen van der Drift wrote: > Thanks for adding this Scott. > > What are your thoughts on moving the repository to github? > > - Koen. > > > On Oct 17, 2013, at 1:50 PM, Scott Christley wrote: > >> Hi all, >> >> Koen's port of some of the BioCocoa classes to iOS is now in the source repository. Thanks Koen! You can find it under BioCocoa/branches/BioCocoa_Touch. I haven't analyzed the differences but at least we have the code available so that analysis can be easily done at a later date. >> >> Scott >> >> On Oct 15, 2013, at 1:09 PM, Koen van der Drift wrote: >> >>> Hi Scott, >>> >>> To be honest, I didn't make notes when I was adapting the framework, but I do remember there wasn't much I had to do. I did update some parts to Objective-C 2.0, e.g. fast enumeration. I didn't want to completely rewrite it, so it is just an adaptation. If you can add it to the repository, that would be great, I'm always struggling with getting access with bioinformatics.org. I'll send you a separate email with the project off-list. >>> >>> It would be great if we could move to github or google code one of these days... >>> >>> Cheers, >>> >>> - Koen. >>> >>> >>> >>> On Oct 15, 2013, at 12:13 PM, Scott Christley wrote: >>> >>>> Hi Koen, >>>> >>>> That's great! It would be nice to put your iOS version under the "branches" directory, then it can be used as a reference. I am very interested to see what classes you were able to port and what changes you needed to make. If you don't have the time to figure out the repository stuff, feel free to send me a tarball and I will put in for you. >>>> >>>> cheers >>>> Scott >>>> >>>> On Oct 15, 2013, at 6:15 AM, Koen van der Drift wrote: >>>> >>>>> Hi all, >>>>> >>>>> A shameless plug to let you all know that my first iOS app 'InDigestion' is now available in the app store. The app allows you to search, download and store protein entries from the UniProt database, show lots of info for each protein, and to help with calculations for protein digestion and peptide mapping experiments. >>>>> >>>>> I'm posting it here since - drumroll - it uses BioCocoa for some of the calculations! To do this, I made an iOS version of the framework, but only with parts I needed, so maybe 20% of it all. Let me know if anyone is interested, and I'll make an attempt to put it on the repository. >>>>> >>>>> You can find it at http://indigestionapp.com. >>>>> >>>>> >>>>> Cheers, >>>>> >>>>> - Koen. >>>>> _______________________________________________ >>>>> Biococoa-dev mailing list >>>>> Biococoa-dev at bioinformatics.org >>>>> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev >>>> >>> >> >> _______________________________________________ >> Biococoa-dev mailing list >> Biococoa-dev at bioinformatics.org >> http://www.bioinformatics.org/mailman/listinfo/biococoa-dev >