[Biophp-dev] bibliographic database

[Frederic.Fleche at sanofi-aventis.com]

Hi Mélanie,


First, sorry for the delay of the reply.

I think you should also have a look at the ENTREZ GENE (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene):
In the download section you will wertainly find information to do the following actions.
 - For each gene you will get the isoforms.
 - For each gene you will associate all the synonyms.
 - For each gene you will associate some interesting pubmid.
......

You should also have a look at Cabio project at NCI (http://cabio.nci.nih.gov/) :
You will certainly find informations concerning gene expression.
If you need a php script for SOAP client service to Cabio do not hesitate to ask, I have one in my computer.

Concerning openBQS I never use it. But you should check if is regularly updated.


Hope this helps a little.

If more questions do not hesitate to ask.

Fred


-----Message d'origine-----
De : biophp-dev-bounces+frederic.fleche=aventis.com at bioinformatics.org
[mailto:biophp-dev-bounces+frederic.fleche=aventis.com at bioinformatics.or
g]De la part de mel list_php
Envoyé : mercredi 9 mars 2005 11:20
À : biophp-dev at bioinformatics.org
Objet : [Biophp-dev] bibliographic database


Hi,

I'm working on a database following experimental results on targets.
I'd like to include bibliographic information regarding these targets, if 
possible classified by experimental step (sequence/expression/structure for 
example).

I was wondering if somebody here already made that kind of thing and would 
have any suggestion on how to start?
I was thinking about using openBQS (http://industry.ebi.ac.uk/openBQS/) but 
this is more a general query page, my ideal goal is to have something like a 
page presenting the information on my targets at each step and next to it an 
hyperlink "relevant publications".
My second idea was to retrieve synonyms of my targets names and using that 
querying automatically SRS, retrieving pmid/title for each target and 
storing that in a mysql table.

As you see I'm in early stage of reflexion, so any idea wellcome!!

Melanie

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