There is no real problem with the GQ::Server modules - they are in docs or in little-used methods that need to be reworked, but aren't on the priority list. I'm defending my honour here- I worked pretty hard at moving stuff into the Adaptor layers. Dave On Tuesday, December 18, 2001, at 09:44 AM, Mark Wilkinson wrote: > David Block wrote: > >> DbObj is context-specific - for a certain network xml adaptor I am >> writing, it is called Session. > > Okay, I see that... but it appears that the Adaptor layer hasn't quite > been > fully ripped out of Genquire itself yet. > > The following files *outside* of the Adaptor layer make calls to ->dbh: > > txtHandAnnotate (my problem) > QueryScreen->getBlastHit (my problem) > > GQ::Server::Feature > GQ::Server::Sequence > GQ::Server::Transcript > > This means that Genquire will not, as it stands, work off of a flat-file > since flat files have no dbh. Whatever calls these modules are making > will > have to be pulled down into the adaptor layer... > > I am presuming that you will hit the same problem with your xml adaptor > as I > just did with my GB Flat file adaptor so I'll deal with the first two > if you > deal with the Server feature problems :-) > > M > > > > -- > -------------------------------- > "Speed is subsittute fo accurancy." > ________________________________ > > Dr. Mark Wilkinson > Bioinformatics Group > National Research Council of Canada > Plant Biotechnology Institute > 110 Gymnasium Place > Saskatoon, SK > Canada > > > > > > _______________________________________________ > Genquire-dev maillist - Genquire-dev@bioinformatics.org > http://bioinformatics.org/mailman/listinfo/genquire-dev > > David Block (858)812-1513 Bioinformatics http://www.gnf.org dblock@gnf.org Just ridin' the Coaster...