[Genquire-users] Re: [Bioperl-announce-l] Genquire Initial Release.

[David Block]

On Fri, 9 Nov 2001, Brian Haas wrote:

> 
> David,
> 
> I'm very interested in checking out the genquire
> software.  I went to the site at bioinformatics.org
> and I was unable to find any software to download.
> 
> Do you have any suggestions?  Any information here
> would be greatly appreciated.
> 
> Thanks,
> 
> -Brian
> 
> 
Glad you like it so far, Brian!

The best way to get it right now is by anonymous cvs from the website.  
You need to have cvs and ssh installed - if you are coming from Windows, 
that's tricky.  On linux you may already have the correct software.

Matt Links at PBI is working on a semi-automated install script 
(equivalent to an install wizard) that works for Windows.

We are tackling a few bugs, but we could put together a snapshot (.tar.gz 
or .zip) for you to download.  Let us know your platform, and we'll see 
what we can do.

Dave
Genquire dev
> 
> 
> --- David Block <dblock@gnf.org> wrote:
> > Genquire - an integrated graphical genomic
> > editor/browser - is now available at
> > Bioinformatics.org.
> > 
> > Genquire has now been released under a BSD license. 
> > Built on bioperl and bioperl-gui, this application
> > allows users to graphically view, insert, delete,
> > modify, and further annotate genomic features.
> > 
> > New applications can be added to Genquire using a
> > simple XML-based plugin layer.  This allows
> > one-click access to your most used genomic
> > applications, such as BLAST or SIM4, from a
> > graphical view of the sequence.
> > 
> > Genquire comes with a predefined database schema,
> > but is built using an adaptor layer that will allow
> > relatively quick adaptation of all of Genquire's
> > features to any genomic data source that can talk to
> > perl.
> > 
> > Genquire gives users three views of the sequence
> > simultaneously: chromosome, contig and sequence
> > views can be used interactively.
> > 
> > Genquire is integrated with the Gene Ontology system
> > for direct access to the GO database and graphical
> > GO annotation of genomic features.
> > 
> > Come see Genquire at Bioinformatics.org.
> > 
> > Sincerely,
> > Mark Wilkinson and David Block
> > Genquire project leads
> > 
> > _______________________________________________
> > Bioperl-announce-l mailing list
> > Bioperl-announce-l@bioperl.org
> >
> http://bioperl.org/mailman/listinfo/bioperl-announce-l
> 
> 
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