[Pdbwiki-devel] PDB version 4

[Henning Stehr]

I'll have a look.

Henning

On Mon, Jul 18, 2011 at 11:07 AM, Dan Bolser <dan.bolser at gmail.com> wrote:
> The unzipping is based on time stamp of the files, so if the remed
> files have a historic time stamp (for some reason), they won't be
> freshly unzipped.
>
> One solution if the above guess is right would be to just remove the
> entire unzipped archive and run the unzip job from scratch. That
> shouldn't take longer than about 24 hours (the current incremental job
> takes just a few minutes).
>
> I'm into my last three days here at Dundee, so I can't look just now.
> Sorry about that!
>
>
> Cheers,
> Dan.
>
> On 18 July 2011 10:00, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
>> Hi guys
>>
>> So as expected weird things are happening. Henning it seems that the pdbase
>> upload ran through but there are some strange counts:
>>
>> Zipped cif files:        74428
>> Unzipped cif files:    74297
>> Entries in struct:      74293
>>
>> What's strange is why quite a few files failed to unzip. Any ideas? The
>> count of unzipped files coincides with last week's pdb count, so definitely
>> there's something weird here.
>>
>> Jose
>>
>>
>>
>> On 15 July 2011 19:00, Dan Bolser <dan.bolser at gmail.com> wrote:
>>>
>>> Thanks Jose!
>>>
>>> On 15 July 2011 17:51, Jose M. Duarte <jose.m.duarte at gmail.com> wrote:
>>> > FYI I've stopped the pdbwiki update for next week.
>>> >
>>> > This week they've released the next remediation issue of the PDB archive
>>> > and
>>> > I can expect things going wrong with the pipeline. Well for sure many
>>> > thousand structures will be updated so the pdbwiki update will take very
>>> > long. I'll check on monday.
>>> >
>>> > Nice weekend!
>>> >
>>> > Jose
>>> >
>>> > _______________________________________________
>>> > Pdbwiki-devel mailing list
>>> > Pdbwiki-devel at bioinformatics.org
>>> > http://www.bioinformatics.org/mailman/listinfo/pdbwiki-devel
>>> > http://www.pdbwiki.org
>>> >
>>> >
>>
>>
>
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