[ssml] HMM

[Dan Bolser]

hmm...

Can I ask about the null models?

I guess I thought the allignment would just pop out at the end...

++ Kevin Karplus--
>
> One can write a simple HMM scoring program in a few lines, but it will be rather
> slow.  Training takes more lines.  Doing sequence weighting take still more.
> Doing space-efficient scoring with recovery of
> alignment takes quite a few.  Handling various different null models takes more
> lines.  Handling calibration of the E-values takes some more lines.
>
> After a while, it all adds up.