Did you ever wish to compare protein sequences or to identify 3D
structures of proteins that are similar to your protein?
PACKAGE:charite.christo.
PACKAGE:charite.christo.strap.
Are you interested in remote phylogenetic relationships to discuss the function of a protein?
Do you want to take advantage of the experiences of the Bioinformatics community to
explore your proteins?
Making sequence alignments of related protein sequences is a common task in biology.
It reveals regions which are highly conserved and are functionally important.
Automatic approaches alone are often not fully satisfactory and manual
refinement is necessary in most cases particularly when the sequences
are very dissimilar.
STRAP is a
comfortable and comprehensive tool to edit multiple protein sequence
alignments.
A wide range of functions related to protein sequences and
protein structures are accessible with an intuitive graphical
interface.
STRAP is tightly integrated into your desktop environment supporting
WIKI:Cut_paste and WIKI:Word_completion and spell check.
WIKI:Drag_and_drop is available for proteins, nucleotide structures and hetero structures.
WIKI:Context_menu for proteins, annotations and files are triggered by right mouse click.
The program appears to be complicated in the beginning.
With the help of the integrated tutorials you will learn how to
apply the currently available methods to compare proteins sequences
and structures.
The key features are:
What it cannot do:
- Docking
- Gene structure, promotor analysis
- Structure modelling
- Molecular dynamics
- Gene expression
- RNA-3D-structure