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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1156 ] birchdb, lbirchdb - can't call xace
    Date:
    10/09/11 13:22
    Submitted by:
    B_Fristensky
    Assigned to:
    B_Fristensky
    Category:
    Unset
    Priority:
    5
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    birchdb, lbirchdb - can't call xace
    Original submission:
    On some Linux systems, neither birchdb nor lbirchdb will launch:

    {crow.cs.umanitoba.ca:/home/other/staff/frist}lbirchdb
    /home/other/staff/frist/BIRCH/local/lib-linux-x86_64:/home/other/staff/frist/BIRCH/lib-linux-x86_64:/home/other/staff/frist/BIRCH/lib-linux-x86_64/openwin/lib:/home/other/staff/frist/BIRCH/lib-linux-x86_64/fc4libs:
    Traceback (most recent call last):
    File "/home/other/staff/frist/BIRCH/script/lbirchdb", line 7, in <module>
    birchace.call_ace(os.path.join(birchenv.BIRCH, 'local', 'public_html', 'birchdb'))
    File "/import/share/tmp/frist/script/birchace.py", line 58, in call_ace
    subprocess.call(['xace'], env=ACEENV) # &
    File "/usr/lib64/python2.6/subprocess.py", line 478, in call
    p = Popen(*popenargs, **kwargs)
    File "/usr/lib64/python2.6/subprocess.py", line 639, in __init__
    errread, errwrite)
    File "/usr/lib64/python2.6/subprocess.py", line 1220, in _execute_child
    raise child_exception
    OSError: [Errno 2] No such file or directory
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    This problem appears to have been encountered before in Bug 1139. However, it looks like the fix got incorporated into
    tbirchdb.sh, but not into the other birchdb scripts, which
    are now python scripts. So those scripts need to be fixed.
    04/04/12 19:24 B_Fristensky

    1 - 1 of 1

    Dependent on ticket
    xace, tace - libraries fail to load; incompatible libraries
       
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    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Open 04/12/12 15:23 B_Fristensky
    resolution_id Not Resolved 04/12/12 15:23 B_Fristensky
    close_date 12/31/69 19:00 04/12/12 15:23 B_Fristensky
    status_id Pending 10/09/11 13:23 B_Fristensky
    assigned_to unset 10/09/11 13:23 B_Fristensky
    resolution_id Unset 10/09/11 13:23 B_Fristensky

     

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