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  • CD-HIT: Sequence clustering software - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1106 ]
    Date:
    09/10/10 06:44
    Submitted by:
    jtamames
    Assigned to:
    unset
    Category:
    Compiling
    Priority:
    5
    Ticket group:
    Critical
    Resolution:
    Resolved
    Summary:
    Original submission:
    Dear friends

    I am unable to compile cdhit-v4.0-2010-04-20 in my Ubuntu 10.04_x64. I would appreciate very much your help. I got the following error message:

    $ make
    g++ -O2 -DNO_OPENMP cdhit-common.c++ -c
    cdhit-common.c++: In member function ‘int WordTable::ReadTable(FILE*)’:
    cdhit-common.c++:851: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result
    cdhit-common.c++:853: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result
    cdhit-common.c++: In member function ‘void SequenceDB::WriteClusters(const char*, const char*, const Options&)’:
    cdhit-common.c++:1292: error: ‘uint64_t’ was not declared in this scope
    cdhit-common.c++:1292: error: template argument 1 is invalid
    cdhit-common.c++:1292: error: template argument 2 is invalid
    cdhit-common.c++:1292: error: invalid type in declaration before ‘(’ token
    cdhit-common.c++:1294: error: invalid types ‘int[int]’ for array subscript
    cdhit-common.c++:1294: error: expected ‘)’ before ‘sequences’
    cdhit-common.c++:1295: error: request for member ‘begin’ in ‘sorting’, which is of non-class type ‘int’
    cdhit-common.c++:1295: error: request for member ‘end’ in ‘sorting’, which is of non-class type ‘int’
    cdhit-common.c++:1297: error: invalid types ‘int[int]’ for array subscript
    cdhit-common.c++: In member function ‘void SequenceDB::DoClustering(int, const Options&)’:
    cdhit-common.c++:1723: warning: unknown conversion type character ‘)’ in format
    make: *** [cdhit-common.o] Error 1


    Thanks a lot!!
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    use later versions i.e. 4.5.4 05/16/11 00:37 liwz
    No results for "Dependent on ticket"
    No results for "Dependent on Task"
    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Pending 05/16/11 00:37 liwz
    resolution_id Unset 05/16/11 00:37 liwz
    close_date 12/31/69 19:00 05/16/11 00:37 liwz

     

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