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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1138 ] Git migration
    Date:
    03/15/11 22:03
    Submitted by:
    umhameld
    Assigned to:
    B_Fristensky
    Category:
    Getbirch
    Priority:
    5
    Ticket group:
    New Feature Request
    Resolution:
    Resolved
    Summary:
    Git migration
    Original submission:
    Frankly there isn't a lot to do here, and I dont think I am jumping tho gun in saying that this has been a long time coming =D. I have set up the permission/timestamp preservation and created a repository that mirrors psgendb.

    This needs to be tested. I have set up the " development version of birch" in getbirch to download this tarball. It should indicate in the log 'installing from git'.

    The actual repository itself can be seen on gitweb at http://birchlabs.dyndns-server.com/gitweb/?p=psgendb.git;a=summary

    Note the files '.git_cache_meta' and '.git_cache_time' accessible by viewing the head commit as a tree and viewing the files as blobs or raw text. These files store the time and permission data for each file, restored on a checkout. It is important that we verify that these values are correct.

    Notably, there were some errors in creating the mirror of psgendb that are the result of me not having the permissions to read them. This is a relatively small list however, and may not be a deal breaker - I would feel more comfortable getting this fixed though. This is where a text mime attachment would be *great*... but instead I must point you to look at /home/psgendb/gitadd.log

    Once this is verified to be in working state, we should have a phone/web conference or something to walk you and graham through the git bare bones basics. I will be back in 6 weeks, and this is probably done better in person in the machray lab.




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    Followups
    Comment Date By
    Since we're going to do the migration when Dale gets back to Winnipeg, I have made it a goal to "clean up" BIRCH a bit before we do that. After we freeze BIRCH 2.8 as a stable release, the biggest single clean up step will be to get rid of GDE. That should shrink the size and number of files in one fell swoop. I'll try to go through and see if there are other files that can be retired as well. More on this can be found on the BIRCH Wiki 03/20/11 18:27 B_Fristensky
    Note: the development version is crashing due to a memory error and the fact that it is larger than the 2.8 beta framework. Do not bother testing until i report this as fixed. 03/16/11 21:40 umhameld
    Note: the development version is crashing due to a memory error and the fact that it is larger than the 2.8 beta framework. Do not bother testing until i report this as fixed. 03/16/11 21:40 umhameld
    I agree that it will probably be best if we can sit down together for a day and do the conversion to Git. While I am very much in agreement with the decision to migrate to Git, I still have a lot of trepidation about screwing things up.

    For that reason, we'll di this when you return. I have kind of arbitrarily decided that a Priority of 5 should be the cut off for "showstoppers" required for the next release. Therefore, I have changed the priority to 4 for now. It will go up after v2.8 is released.
    03/16/11 11:21 B_Fristensky
    Note: the development version is crashing due to a memory error and the fact that it is larger than the 2.8 beta framework. Do not bother testing until i report this as fixed. 03/15/11 23:42 umhameld
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    Ticket change history
    Field Old value Date By
    status_id Open 08/11/11 19:09 umhameld
    resolution_id Not Resolved 08/11/11 19:09 umhameld
    close_date 12/31/69 19:00 08/11/11 19:09 umhameld
    status_id Pending 03/20/11 18:27 B_Fristensky
    resolution_id Unset 03/20/11 18:27 B_Fristensky
    priority 9 03/17/11 18:41 umhameld
    status_id Open 03/16/11 21:40 umhameld
    priority 4 03/16/11 21:40 umhameld
    resolution_id Not Resolved 03/16/11 21:40 umhameld
    status_id Pending 03/16/11 11:21 B_Fristensky
    priority 9 03/16/11 11:21 B_Fristensky
    resolution_id Unset 03/16/11 11:21 B_Fristensky
    priority 5 03/15/11 22:04 umhameld
    assigned_to unset 03/15/11 22:04 umhameld

     

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