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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1160 ] Negative values not permitted in slider
    Date:
    10/17/11 18:53
    Submitted by:
    B_Fristensky
    Assigned to:
    Alvare
    Category:
    bioLegato
    Priority:
    6
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    Negative values not permitted in slider
    Original submission:
    Biolegato appears to incorrectly set ranges in menu sliders when the range includes numbers less than 0. For example, in $birch/dat/blprotein/menus/Alignment/tcoffee.item:

    arg:GAPOPEN
    argtype:slider
    arglabel:Gap open penalty
    argmin:-100
    argmax:0
    argvalue:-10

    arg:GAPEXT
    argtype:slider
    arglabel:Gap extension penalty
    argmin:-10
    argmax:0
    argvalue:-1


    arg:COSPEN
    argtype:slider
    arglabel:Extension penalty for unalignable regions
    argmin:-10
    argmax:0
    argvalue:-10

    all three parameters are set, in the TCOFFEE menu, to have a range of 0..0. These numbers cannot be changed by typing in negative numbers. In blprotein, if you open Alignment --> TCOFFEE you'll see this.
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    Ticket change history
    Field Old value Date By
    status_id Open 10/18/11 10:42 Alvare
    close_date 12/31/69 19:00 10/18/11 10:42 Alvare
    resolution_id Not Resolved 10/18/11 10:21 Alvare
    status_id Pending 10/17/11 18:53 B_Fristensky
    priority 5 10/17/11 18:53 B_Fristensky
    assigned_to unset 10/17/11 18:53 B_Fristensky
    resolution_id Unset 10/17/11 18:53 B_Fristensky

     

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