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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1162 ] Import Foreign Format - error reading fasta files
    Date:
    11/16/11 13:03
    Submitted by:
    B_Fristensky
    Assigned to:
    B_Fristensky
    Category:
    bioLegato
    Priority:
    4
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    Import Foreign Format - error reading fasta files
    Original submission:
    When reading a FASTA file, Import Foreign Format gives
    errors like:

    BioLegato (GenBank parser): ERROR --- Invalid Genbank sequence!
    LOCUS HumanA1HumanA1 2320 bp

    This is probably because bioLegato can't read the pseudo
    GenBank format produced by readseq. Probably the best
    fix is to have Import Foreign Format generate FASTA files,
    and read that.
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    In bldna and blprotein, changed file format from GenBank to fasta. 12/28/11 15:47 B_Fristensky
    No results for "Dependent on ticket"
    No results for "Dependent on Task"
    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Open 12/28/11 15:47 B_Fristensky
    resolution_id Not Resolved 12/28/11 15:47 B_Fristensky
    close_date 12/31/69 19:00 12/28/11 15:47 B_Fristensky
    status_id Pending 11/16/11 13:03 B_Fristensky
    priority 5 11/16/11 13:03 B_Fristensky
    assigned_to unset 11/16/11 13:03 B_Fristensky
    resolution_id Unset 11/16/11 13:03 B_Fristensky

     

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