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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1174 ] BACHREST - MINSITE and MAXSITE have no effect
    Date:
    09/24/12 12:13
    Submitted by:
    B_Fristensky
    Assigned to:
    B_Fristensky
    Category:
    Unset
    Priority:
    5
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    BACHREST - MINSITE and MAXSITE have no effect
    Original submission:
    BACHREST appears to correctly read MINSITE and MAXSITE, as evidenced by the correct values seen in program output. However, these parameters appear to have no effect in selecting only those enzymes whose cutting sites are in the specified size range.
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    Followups
    Comment Date By
    BACHREST has been compiled for winxp-32 and now appears in the binary file. 05/06/13 18:12 B_Fristensky
    BACHREST has now been recompiled for linux-intel and appears in the binary file. 05/03/13 18:42 B_Fristensky
    This turned out to be due to an unterminated comment line in the main procedure. This line was just above the two lines that compare the length of a site with MINSITE and MAXSITE.

    Since this program is compiled by first translating from Pascal to C using p2c. So apparently when p2c encounters an unterminated comment, it just keeps going until it sees a terminator for the next comment.

    As of Sept. 30, 2012, BACHREST has been recompiled for both Solaris platforms, fo r linux-x86_64 and for osx-x86_64. It still needs to be recompiled for linux-intel and winxp-32.
    09/30/12 18:59 B_Fristensky
    No results for "Dependent on ticket"
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    Ticket change history
    Field Old value Date By
    status_id Open 05/06/13 18:12 B_Fristensky
    resolution_id Not Resolved 05/06/13 18:12 B_Fristensky
    close_date 12/31/69 19:00 05/06/13 18:12 B_Fristensky
    status_id Pending 09/24/12 12:14 B_Fristensky
    assigned_to unset 09/24/12 12:14 B_Fristensky
    resolution_id Unset 09/24/12 12:14 B_Fristensky

     

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