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  • CD-HIT: Sequence clustering software - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #176 ] includes at least one deprecated or antiquated header..
    Date:
    02/07/04 04:48
    Submitted by:
    dmb
    Assigned to:
    unset
    Category:
    Installing
    Priority:
    5
    Ticket group:
    Non-critical
    Resolution:
    Unset
    Summary:
    includes at least one deprecated or antiquated header..
    Original submission:
    Not really sure how serious this is, but I found this problem installing under RedHat9,

    gcc --version
    gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)

    Full error message...

    g++ -O cd-hit.c++ -c
    In file included from /usr/include/c++/3.2.2/backward/iostream.h:31,
    from cd-hi.h:22,
    from cd-hit.c++:17:
    /usr/include/c++/3.2.2/backward/backward_warning.h:32:2: warning: #warning This
    file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples
    include substituting the <X> header for the <X.h> header for C++ includes, or <sstream> instead of the deprecated header <strstream.h>. To disable this warning
    use -Wno-deprecated.

    And again (same message) from

    In file included from /usr/include/c++/3.2.2/backward/iostream.h:31,
    from cd-hi.h:22,
    from cd-hi-class.c++:22:

    Then we get warnings about...

    cd-hi-class.c++:497: no matching function for call to `
    std::basic_ifstream<char, std::char_traits<char> >::read(int*&, unsigned int
    )'

    And again (io related functions)...

    cd-hi-class.c++:498:
    cd-hi-class.c++:516:
    cd-hi-class.c++:517:

    make: *** [cd-hi-class.o] Error 1
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    Fixed by luc! 03/05/04 13:03 dmb
    No results for "Dependent on ticket"
    No results for "Dependent on Task"
    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Unset 03/05/04 13:03 dmb
    close_date 12/31/69 19:00 03/05/04 13:03 dmb

     

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