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  • CD-HIT: Sequence clustering software - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #178 ] -M problems on some systems
    Date:
    02/07/04 08:35
    Submitted by:
    dmb
    Assigned to:
    unset
    Category:
    Compiling
    Priority:
    5
    Ticket group:
    Non-critical
    Resolution:
    Resolved
    Summary:
    -M problems on some systems
    Original submission:
    I have heard of and experienced a few problems with the -M option on some systems (sorry for lack of details). It seems that the units of -M can vary from system to system.
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    Followups
    Comment Date By

    Linux beagle 2.4.20-31.9 #1 Tue Apr 13 17:38:16 EDT 2004 i686 athlon i386 GNU/Linux)

    I found if I use -M up to 2212 the program runs fine, but after that (2213) I get a fatal memory error...

    Fatal Error
    No memory, change -M option

    Program halted !!


    Then if I increase the value of -M beyond 2211974 (i.e. to 2211975) it starts working again!

    I am confused how / what causes the above error. Probing the memory space isn't showing up a clear pattern. I could do a full sweep, but it probably already makes sense to someone in the know
    08/16/04 15:46 unset
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    Ticket change history
    Field Old value Date By
    status_id Open 05/16/11 00:38 liwz
    assigned_to lducazu 05/16/11 00:38 liwz
    resolution_id Unset 05/16/11 00:38 liwz
    close_date 12/31/69 19:00 05/16/11 00:38 liwz
    status_id Unset 08/19/04 07:32 dmb
    assigned_to unset 08/13/04 11:05 dmb

     

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