List of Slides and Classes

ABA_wild_type_only
All_ABA_Data
abiotic
biotic
chemical
hormone
devlopment
ABA_classes


ABA_wild_type_only

ABA signaling Related Sildes (Wild type only)


Slide Name Source
Hoth_ABA50_mM_3#5hours Hoth et al(2002)
Li_ABA_10uM_0#6hours Li et al(2006)
ME00333_ABA_10uM_1hours TAIR microarray experiment ME00333
ME00333_ABA_10uM_30minutes TAIR microarray experiment ME00334
ME00333_ABA_10uM_3hours TAIR microarray experiment ME00335
ME00351_ABA_30uM_24hour TAIR microarray experiment id ME00351
ME00351_ABA_3uM_24hours TAIR microarray experiment id ME00352
seki_ABA_100uM_01h Seki et al(2002)
seki_ABA_100uM_02hours Seki et al(2002)
seki_ABA_100uM_05h Seki et al(2002)
seki_ABA_100uM_10h Seki et al (2002)
seki_ABA_100uM_24h Seki et al(2002)
xin_ABA_1uM_4h Xin et al (2005)

All_ABA_Data

ABA signaling Related Sildes (All data)


Slide Name Source
Hoth_ABA50_mM_3#5hours Hoth et al(2002)
Hoth#abi1_mutant Hoth et al(2002)
Li_ABA_10uM_0#6hours Li et al(2006)
ME00333_ABA_10uM_1hours TAIR microarray experiment ME00333
ME00333_ABA_10uM_30minutes TAIR microarray experiment ME00334
ME00333_ABA_10uM_3hours TAIR microarray experiment ME00335
ME00351_ABA_30uM_24hour TAIR microarray experiment id ME00351
ME00351_ABA_3uM_24hours TAIR microarray experiment id ME00352
seki_ABA_100uM_01h Seki et al(2002)
seki_ABA_100uM_02hours Seki et al(2002)
seki_ABA_100uM_05h Seki et al(2002)
seki_ABA_100uM_10h Seki et al (2002)
seki_ABA_100uM_24h Seki et al(2002)
xin_ABA_1uM_4h Xin et al (2005)
Xin#rop10mutant Xin et al (2005)
Sanchez#ABA#2h Sanchez et al (2005)
Sanchez#ABA#6h Sanchez et al(2005)
Sanchez#cADPR#6h Sanchez et al (2005)
Suzuki# ABA_effect_ abi3 Suzuki et al (2003)
Suzuki# ABA_effect_ VP1 Suzuki et al (2003)
Suzuki# abi3_ noABA Suzuki et al (2003)
Suzuki# abi3_ plusABA Suzuki et al (2003)

abiotic


Abiotic Stress

Slide header Brief description Experiment ID TAIR experiment ID
cold_30min_root cold(4 C, 30minutes)root ME00325r 1007966553#975
cold_1h_root cold(4 C, 1hours)root ME00325r 1007966553#977
cold_3h_root cold(4 C, 3hours)root ME00325r 1007966553#979
cold_6h_root cold(4 C, 6hours)root ME00325r 1007966553#981
cold_12h_root cold(4 C, 12hours)root ME00325r 1007966553#983
cold_24h_root cold(4 C, 24hours)root ME00325r 1007966553#985
cold_30min_shoot cold(4 C, 30minutes)shoot ME00325s 1007966553#974
cold_1h_shoot cold(4 C, 1hours)shoot ME00325s 1007966553#976
cold_3h_shoot cold(4 C, 3hours)shoot ME00325s 1007966553#978
cold_6h_shoot cold(4 C, 6hours)shoot ME00325s 1007966553#980
cold_12h_shoot cold(4 C, 12hours)shoot ME00325s 1007966553#982
cold_24h_shoot cold(4 C, 24hours)shoot ME00325s 1007966553#984
drought_12h_root time after treatment(12 hrhours)rootdry air stream(15minutes) ME00338r 1007966668#1016
drought_15min_root time after treatment(15 minminutes)rootdry air stream(15minutes) ME00338r 1007966668#1018
drought_1h_root time after treatment(1 hrhours)rootdry air stream(15minutes) ME00338r 1007966668#1020
drought_24h_root time after treatment(24 hrhours)rootdry air stream(15minutes) ME00338r 1007966668#1022
drought_30min_root time after treatment(30 minminutes)rootdry air stream(15minutes) ME00338r 1007966668#1024
drought_3h_root time after treatment(3 hrhours)rootdry air stream(15minutes) ME00338r 1007966668#1026
drought_6h_root time after treatment(6 hrhours)rootdry air stream(15minutes) ME00338r 1007966668#1028
drought_12h_shoot time after treatment(12 hrhours)shootdry air stream(15minutes) ME00338s 1007966668#1017
drought_15min_shoot time after treatment(15 minminutes)shootdry air stream(15minutes) ME00338s 1007966668#1019
drought_1h_shoot time after treatment(1 hrhours)shootdry air stream(15minutes) ME00338s 1007966668#1021
drought_24h_shoot time after treatment(24 hrhours)shootdry air stream(15minutes) ME00338s 1007966668#1023
drought_30min_shoot time after treatment(30 minminutes)shootdry air stream(15minutes) ME00338s 1007966668#1025
drought_3h_shoot time after treatment(3 hrhours)shootdry air stream(15minutes) ME00338s 1007966668#1027
drought_6h_shoot time after treatment(6 hrhours)shootdry air stream(15minutes) ME00338s 1007966668#1029
genotoxic_30min_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 30minutes)root ME00326r 1007966782#1087
genotoxic_1h_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 1hours)root ME00326r 1007966782#1089
genotoxic_3h_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 3hours)root ME00326r 1007966782#1091
genotoxic_6h_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 6hours)root ME00326r 1007966782#1093
genotoxic_12h_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 12hours)root ME00326r 1007966782#1095
genotoxic_24h_root bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 24hours)root ME00326r 1007966782#1097
genotoxic_30min_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 30minutes)shoot ME00326s 1007966782#1086
genotoxic_1h_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 1hours)shoot ME00326s 1007966782#1088
genotoxic_3h_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 3hours)shoot ME00326s 1007966782#1090
genotoxic_6h_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 6hours)shoot ME00326s 1007966782#1092
genotoxic_12h_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 12hours)shoot ME00326s 1007966782#1094
genotoxic_24h_shoot bleomycin plus mitomycin(bleomycin 1.5ug/ml plus mitomycin C 22ug/ml, 24hours)shoot ME00326s 1007966782#1096
heat_12h_root average daily temperature(25 C, 9hours)heat(38 C, 3hours)root ME00339r 1007967124#1239
heat_15min_root heat(38 C, 15minutes)root ME00339r 1007967124#1242
heat_1h_root heat(38 C, 1hours)root ME00339r 1007967124#1245
heat_24h_root average daily temperature(25 C, 21hours)heat(38 C, 3hours)root ME00339r 1007967124#1247
heat_30min_root heat(38 C, 30minutes)root ME00339r 1007967124#1250
heat_3h_root heat(38 C, 3hours)root ME00339r 1007967124#1257
heat_4h_root average daily temperature(25 C, 1hours)heat(38 C, 3hours)root ME00339r 1007967124#1259
heat_6h_root average daily temperature(25 C, 3hours)heat(38 C, 3hours)root ME00339r 1007967124#1261
heat_12h_shoot average daily temperature(25 C, 9hours)heat(38 C, 12hours)shoot ME00339s 1007967124#1240
heat_15min_shoot heat(38 C, 15minutes)shoot ME00339s 1007967124#1243
heat_1h_shoot heat(38 C, 1hours)shoot ME00339s 1007967124#1246
heat_24h_shoot average daily temperature(25 C, 21hours)heat(38 C, 3hours)shoot ME00339s 1007967124#1248
heat_30min_shoot heat(38 C, 30minutes)shoot ME00339s 1007967124#1251
heat_3h_shoot heat(38 C, 3hours)shoot ME00339s 1007967124#1258
heat_4h_shoot average daily temperature(25 C, 1hours)heat(38 C, 3hours)shoot ME00339s 1007967124#1260
heat_6h_shoot average daily temperature(25 C, 3hours)heat(38 C, 3hours)shoot ME00339s 1007967124#1262
heat_15min_38C_cell_culture heat(36 C, 15minutes)cell culture ME00339c 1007967124#1241
heat_1h_38C_cell_culture heat(36C, 1hours)cell culture ME00339c 1007967124#1244
heat_30min_38C_cell_culture heat(36 C, 30minutes)cell culture ME00339c 1007967124#1249
heat_3h_38C_1h_recover_cell_culture average daily temperature(25 C, 1hours)heat(38 C, 3hours)cell culture ME00339c 1007967124#1252
heat_3h_38C_21h_recover_cell_culture average daily temperature(25 C, 21hours)heat(38 C, 3hours)cell culture ME00339c 1007967124#1253
heat_3h_38C_3h_recover_cell_culture average daily temperature(25 C, 3hours)heat(38 C, 3hours)cell culture ME00339c 1007967124#1254
heat_3h_38C_9h_recover_cell_culture average daily temperature(25 C, 9hours)heat(38 C, 3hours)cell culture ME00339c 1007967124#1255
heat_3h_38C_cell_culture heat(36 C, 3hours)cell culture ME00339c 1007967124#1256
osmotic_30min_root mannitol(300 mM, 30minutes)root ME00327r 1007966835#1113
osmotic_1h_root mannitol(300 mM, 1hours)root ME00327r 1007966835#1115
osmotic_3h_root mannitol(300 mM, 3hours)root ME00327r 1007966835#1117
osmotic_6h_root mannitol(300 mM, 6hours)root ME00327r 1007966835#1119
osmotic_12h_root mannitol(300 mM, 12hours)root ME00327r 1007966835#1121
osmotic_24h_root mannitol(300 mM, 24hours)root ME00327r 1007966835#1123
osmotic_30min_shoot mannitol(300 mM, 30minutes)shoot ME00327s 1007966835#1112
osmotic_1h_shoot mannitol(300 mM, 1hours)shoot ME00327s 1007966835#1114
osmotic_3h_shoot mannitol(300 mM, 3hours)shoot ME00327s 1007966835#1116
osmotic_6h_shoot mannitol(300 mM, 6hours)shoot ME00327s 1007966835#1118
osmotic_12h_shoot mannitol(300 mM, 12hours)shoot ME00327s 1007966835#1120
osmotic_24h_shoot mannitol(300 mM, 24hours)shoot ME00327s 1007966835#1122
oxidative_30min_root methyl viologen(10 uM, 30minutes)root ME00340r 1007966941#1165
oxidative_1h_root methyl viologen(10 uM, 1hours)root ME00340r 1007966941#1167
oxidative_3h_root methyl viologen(10 uM, 3hours)root ME00340r 1007966941#1169
oxidative_6h_root methyl viologen(10 uM, 6hours)root ME00340r 1007966941#1171
oxidative_12h_root methyl viologen(10 uM, 12hours)root ME00340r 1007966941#1173
oxidative_24h_root methyl viologen(10 uM, 24hours)root ME00340r 1007966941#1175
oxidative_30min_shoot methyl viologen(10 uM, 30minutes)shoot ME00340s 1007966941#1164
oxidative_1h_shoot methyl viologen(10 uM, 1hours)shoot ME00340s 1007966941#1166
oxidative_3h_shoot methyl viologen(10 uM, 3hours)shoot ME00340s 1007966941#1168
oxidative_6h_shoot methyl viologen(10 uM, 6hours)shoot ME00340s 1007966941#1170
oxidative_12h_shoot methyl viologen(10 uM, 12hours)shoot ME00340s 1007966941#1172
oxidative_24h_shoot methyl viologen(10 uM, 24hours)shoot ME00340s 1007966941#1174
salt_30min_root NaCl(150 mM, 30minutes)root ME00328r 1007966888#1139
salt_1h_root NaCl(150 mM, 1hours)root ME00328r 1007966888#1141
salt_3h_root NaCl(150 mM, 3hours)root ME00328r 1007966888#1143
salt_6h_root NaCl(150 mM, 6hours)root ME00328r 1007966888#1145
salt_12h_root NaCl(150 mM, 12hours)root ME00328r 1007966888#1147
salt_24h_root NaCl(150 mM, 24hours)root ME00328r 1007966888#1149
ME00328s 1007966888#1148

UV-B_30min_root time after treatment(30minutes)light wavelength(UV-B light, 30minutes)root ME00329r 1007966606#1003
UV-B_1h_root time after treatment(1hours)light wavelength(UV-B light, 1hours)root ME00329r 1007966606#1005
UV-B_3h_root time after treatment(3hours)light wavelength(UV-B light, 3hours)root ME00329r 1007966606#1007
UV-B_6h_root time after treatment(6hours)light wavelength(UV-B light, 6hours)root ME00329r 1007966606#1009
UV-B_12h_root time after treatment(12hours)light wavelength(UV-B light, 12hours)root ME00329r 1007966606#1011
UV-B_24h_root time after treatment(24hours)light wavelength(UV-B light, 24hours)root ME00329r 1007966606#1013
UV-B_15min_root time after treatment(15minutes)light wavelength(UV-B light, 15minutes)root ME00329r 1007966606#1015
UV-B_30min_shoot time after treatment(30minutes)light wavelength(UV-B light, 30minutes)shoot ME00329s 1007966606#1002
UV-B_1h_shoot time after treatment(1hours)light wavelength(UV-B light, 1hours)shoot ME00329s 1007966606#1004
UV-B_3h_shoot time after treatment(3hours)light wavelength(UV-B light, 3hours)shoot ME00329s 1007966606#1006
UV-B_6h_shoot time after treatment(6hours)light wavelength(UV-B light, 6hours)shoot ME00329s 1007966606#1008
UV-B_12h_shoot time after treatment(12hours)light wavelength(UV-B light, 12hours)shoot ME00329s 1007966606#1010
UV-B_24h_shoot time after treatment(24hours)light wavelength(UV-B light, 24hours)shoot ME00329s 1007966606#1012
UV-B_15min_shoot time after treatment(15minutes)light wavelength(UV-B light, 15minutes)shoot ME00329s 1007966606#1014
wound_30min_root time after treatment(30minutes)woundingroot ME00330r 1007966439#946
wound_1h_root time after treatment(1hours)woundingroot ME00330r 1007966439#948
wound_3h_root time after treatment(3hours)woundingroot ME00330r 1007966439#950
wound_6h_root time after treatment(6hours)woundingroot ME00330r 1007966439#952
wound_12h_root time after treatment(12hours)woundingroot ME00330r 1007966439#954
wound_24h_root time after treatment(24hours)woundingroot ME00330r 1007966439#956
wound_15min_root time after treatment(15minutes)woundingroot ME00330r 1007966439#958
wound_30min_shoot time after treatment(30minutes)woundingshoot ME00330s 1007966439#945
wound_1h_shoot time after treatment(1hours)woundingshoot ME00330s 1007966439#947
wound_3h_shoot time after treatment(3hours)woundingshoot ME00330s 1007966439#949
wound_6h_shoot time after treatment(6hours)woundingshoot ME00330s 1007966439#951
wound_12h_shoot time after treatment(12hours)woundingshoot ME00330s 1007966439#953
wound_24h_shoot time after treatment(24hours)woundingshoot ME00330s 1007966439#955
wound_15min_shoot time after treatment(15minutes)woundingshoot ME00330s 1007966439#957
Col-0_DS light regime(continuous darkness, 45minutes) ME00345 1007966126#885
Col-0_FS light wavelength(far-red light, 45minutes) ME00345 1007966126#886
Col-0_PS light regime(continuous darkness, 44minutes)light wavelength(red light, 1minutes) ME00345 1007966126#887
Col-0_RS light wavelength(red light, 45minutes) ME00345 1007966126#888
Col-0_BS light wavelength(blue light, 45minutes) ME00345 1007966126#889
Col-0_AS light regime(continuous darkness, 40minutes)light wavelength(UV-A light, 5minutes) ME00345 1007966126#890
Col-0_US light regime(continuous darkness, 40minutes)light wavelength(UV-A/B light, 5minutes) ME00345 1007966126#891
Col-0_WS light wavelength(white light, 45minutes) ME00345 1007966126#892
Col-0_DL light regime(continuous darkness, 4hours) ME00345 1007966126#893
Col-0_FL light wavelength(far-red light, 4hours) ME00345 1007966126#894
Col-0_PL light regime(continuous darkness, 4hours)light wavelength(red light, 1minutes) ME00345 1007966126#895
Col-0_RL light wavelength(red light, 4hours) ME00345 1007966126#896
Col-0_BL light wavelength(blue light, 4hours) ME00345 1007966126#897
Col-0_AL light regime(continuous darkness, 4hours)light wavelength(UV-A light, 5minutes) ME00345 1007966126#898
Col-0_UL light regime(continuous darkness, 4hours)light wavelength(UV-A/B light, 5minutes) ME00345 1007966126#899
Col-0_WL light wavelength(white light, 4hours) ME00345 1007966126#900
RIKEN-Yamauchi Sample1 average daily temperature(22 C, 96 hr) ME00348 1007967219#1286
RIKEN-Yamauchi Sample2 cold(4 C, 96 hr) ME00348 1007967219#1287

biotic


Biotic Stress

Slide header Brief description Experiment ID TAIR experiment ID
Ct18 potato dextrose brothtime after treatment(18hours) ME00341 1007967417#1306
Bc18 Botrytis cinerea(5X10^5 spores/ml)time after treatment(18hours) ME00341 1007967417#1307
Ct48 potato dextrose brothtime after treatment(48hours) ME00341 1007967417#1308
Bc48 Botrytis cinerea(5X10^5 spores/ml)time after treatment(48hours) ME00341 1007967417#1309
avr_4h Pseudomonas syringae ES4326 avrRpt2time after treatment(4hours) ME00353 1008031517#1351
avr_8h Pseudomonas syringae ES4326 avrRpt2time after treatment(8hours) ME00353 1008031517#1352
avr_16h Pseudomonas syringae ES4326 avrRpt2time after treatment(16hours) ME00353 1008031517#1353
avr_24h Pseudomonas syringae ES4326 avrRpt2time after treatment(24hours) ME00353 1008031517#1354
avr_48h Pseudomonas syringae ES4326 avrRpt2time after treatment(48hours) ME00353 1008031517#1355
vir_4h Pseudomonas syringae ES4326time after treatment(4hours) ME00353 1008031517#1356
vir_8h Pseudomonas syringae ES4326time after treatment(8hours) ME00353 1008031517#1357
vir_16h Pseudomonas syringae ES4326time after treatment(16hours) ME00353 1008031517#1358
vir_24h Pseudomonas syringae ES4326time after treatment(24hours) ME00353 1008031517#1359
vir_48h Pseudomonas syringae ES4326time after treatment(48hours) ME00353 1008031517#1360
Atgen-21_2h_DC3000 Pseudomonas syringae pv. tomato DC3000(10e8 cfu/ml)time after treatment(2hours) ME00331 1007966202#914
Atgen-22_6h_DC3000 Pseudomonas syringae pv. tomato DC3000(10e8 cfu/ml)time after treatment(6hours) ME00331 1007966202#915
Atgen-23_24h_DC3000 Pseudomonas syringae pv. tomato DC3000(10e8 cfu/ml)time after treatment(24hours) ME00331 1007966202#916
Atgen-24_2h_avrRpm1 Pseudomonas syringae pv. tomato avrRpm1(10e8 cfu/ml)time after treatment(2hours) ME00331 1007966202#917
Atgen-25_6h_avrRpm1 Pseudomonas syringae pv. tomato avrRpm1(10e8 cfu/ml)time after treatment(6hours) ME00331 1007966202#918
Atgen-26_24h_avrRpm1 Pseudomonas syringae pv. tomato avrRpm1(10e8 cfu/ml)time after treatment(24hours) ME00331 1007966202#919
Atgen-27_2h_HrcC Pseudomonas syringae pv. tomato DC3000 hrcC-(10e8 cfu/ml)time after treatment(2hours) ME00331 1007966202#920
Atgen-28_6h_HrcC Pseudomonas syringae pv. tomato DC3000 hrcC-(10e8 cfu/ml)time after treatment(6hours) ME00331 1007966202#921
Atgen-29_24h_HrcC Pseudomonas syringae pv. tomato DC3000 hrcC-(10e8 cfu/ml)time after treatment(24hours) ME00331 1007966202#922
Atgen-30_2h_Psph Pseudomonas syringae pv. Phaseolicola(10e8 cfu/ml)time after treatment(2hours) ME00331 1007966202#923
Atgen-31_6h_Psph Pseudomonas syringae pv. Phaseolicola(10e8 cfu/ml)time after treatment(6hours) ME00331 1007966202#924
Atgen-32_24h_Psph Pseudomonas syringae pv. Phaseolicola(10e8 cfu/ml)time after treatment(24hours) ME00331 1007966202#925
atgen x-1-1 H2O 1h watertime after treatment(1hours) ME00332 1008080727#1376
atgen x-1-4 H2O 4h watertime after treatment(4hours) ME00332 1008080727#1377
atgen x-2-1 Mg/Ca 1h CaCl2 + MgCl2(1mM CaCl2 + 2.5 mM MgCl2)time after treatment(1hours) ME00332 1008080727#1378
atgen x-2-4 Mg/Ca 4h CaCl2 + MgCl2(1mM CaCl2 + 2.5 mM MgCl2)time after treatment(4hours) ME00332 1008080727#1379
atgen x-3-1 GST 1h GST(1 uM)time after treatment(1hours) ME00332 1008080727#1380
atgen x-3-4 GST 4h GST(1 uM)time after treatment(4hours) ME00332 1008080727#1381
atgen x-4-1 HrpZ 1h hairpin Z(10 uM)time after treatment(1hours) ME00332 1008080727#1382
atgen x-4-4 HrpZ 4h hairpin Z(10 uM)time after treatment(4hours) ME00332 1008080727#1383
atgen x-5-1 GST-NPP1 1h GST-Necrosis-inducing Phytophthora Protein 1(1 uM)time after treatment(1hours) ME00332 1008080727#1384
atgen x-5-4 GST-NPP1 4h GST-Necrosis-inducing Phytophthora Protein 1(1 uM)time after treatment(4hours) ME00332 1008080727#1385
atgen x-6-1 Flg22 1h flagellin(1 uM)time after treatment(1hours) ME00332 1008080727#1386
atgen x-6-4 Flg22 4h flagellin(1 uM)time after treatment(4hours) ME00332 1008080727#1387
atgen x-7-1 LPS 1h lipopolysaccaride(1 uM)time after treatment(1hours) ME00332 1008080727#1388
atgen x-7-4 LPS 4h lipopolysaccaride(1 uM)time after treatment(4hours) ME00332 1008080727#1389
atgenx-C-6 watertime after treatment(6hours) ME00342 1007966021#849
atgenx-C-12 watertime after treatment(12hours) ME00342 1007966021#850
atgenx-C-24 watertime after treatment(24hours) ME00342 1007966021#851
atgenx-Pi-6 Phytophthora infestans(10^6 spores/ml)time after treatment(6hours) ME00342 1007966021#852
atgenx-Pi-12 Phytophthora infestans(10^6 spores/ml)time after treatment(12hours) ME00342 1007966021#853
atgenx-Pi-24 Phytophthora infestans(10^6 spores/ml)time after treatment(12hours) ME00342 1007966021#854
col wt 06h infected Erysiphe orontiitime after treatment(6hours) ME00354 1008031468#1330
col wt 12h infected Erysiphe orontiitime after treatment(12hours) ME00354 1008031468#1332
col wt 18h infected Erysiphe orontiitime after treatment(18hours) ME00354 1008031468#1334
col wt 24h infected Erysiphe orontiitime after treatment(24hours) ME00354 1008031468#1336
col wt 02d infected Erysiphe orontiitime after treatment(2days) ME00354 1008031468#1338
col wt 03d infected Erysiphe orontiitime after treatment(3days) ME00354 1008031468#1340
col wt 04d infected Erysiphe orontiitime after treatment(4days) ME00354 1008031468#1342
col wt 05d infected Erysiphe orontiitime after treatment(5days) ME00354 1008031468#1344

chemical


Chemical Treatment





Slide header Brief description Experiment ID TAIR experiment ID
RIKEN-Goda Sample3 propiconazole(10 uM, 3hours) ME00357 1008080692#1363
RIKEN-Goda Sample4 propiconazole(10 uM, 12hours) ME00357 1008080692#1364
RIKEN-Goda Sample5 uniconazole(10 uM, 3hours) ME00357 1008080692#1365
RIKEN-Goda Sample6 uniconazole(10 uM, 12hours) ME00357 1008080692#1366
RIKEN-Goda Sample11 paclobutrazol(10 uM, 3hours) ME00357 1008080692#1367
RIKEN-Goda Sample12 paclobutrazol(10 uM, 12hours) ME00357 1008080692#1368
RIKEN-Goda Sample13 prohexadione(10 uM, 3hours) ME00357 1008080692#1369
RIKEN-Goda Sample14 prohexadione(10 uM, 12hours) ME00357 1008080692#1370
RIKEN-Goda Sample23 2,4,6-trihydroxybenzamide(10 uM, 3hours) ME00358 1008080715#1372
RIKEN-Goda Sample24 p-chlorophenoxyisobutyric acid(10 uM, 3hours) ME00358 1008080715#1373
RIKEN-Goda Sample25 2,3,5-triiodobenzoic acid(10 uM, 3hours) ME00358 1008080715#1374
RIKEN-Goda Sample26 naphthylphthalamic acid(10 uM, 3hours) ME00358 1008080715#1375
RIKEN-Goda Sample7 brassinazole 220(10 uM, 3hours) ME00359 1008205330#1413
RIKEN-Goda Sample8 brassinazole 220(10 uM, 12hours) ME00359 1008205330#1414
RIKEN-Goda Sample10 brassinazole 91(10 uM, 12hours) ME00359 1008205330#1415
RIKEN-Goda Sample30 brassinazole 220(3 uM, 3hours) ME00359 1008205330#1417
RIKEN-Goda Sample19 AgNO3(10 uM, 3hours) ME00360 1008080786#1397
RIKEN-Goda Sample20 aminoethoxyvinylglycine(10 uM, 3hours) ME00360 1008080786#1398
RIKEN-Goda Sample27 cycloheximide(10 uM, 3hours) ME00361 1008080804#1400
RIKEN-Goda Sample22 MG132(10 uM, 3hours) ME00362 1008080822#1408
RIKEN-Goda Sample15 PNO8(1 uM, 3hours) ME00363 1008080809#1403
RIKEN-Goda Sample16 PNO8(1 uM, 12hours) ME00363 1008080809#1404
RIKEN-Goda Sample29 PNO8(10 uM, 3hours) ME00363 1008080809#1406
RIKEN-Goda Sample17 ibuprofen(10 uM, 3hours) ME00364 1008080827#1410
RIKEN-Goda Sample18 daminozide(10 uM, 3hours) ME00364 1008080827#1411
RIKEN-Goda Sample21 salicylic acid(10 uM, 3hours) ME00364 1008080827#1412

hormone


Hormone Treatment

Slide header Brief description Experiment ID TAIR experiment ID
RIKEN-Goda Sample19 zeatin(1 uM, 3hours) ME00344 1007966040#857
RIKEN-Goda Sample14 Methyl Jasmonate(10 uM, 1hours) ME00337 1007965964#843
RIKEN-Goda Sample6 Methyl Jasmonate(10 uM, 30minutes) ME00337 1007965964#844
RIKEN-Goda Sample22 Methyl Jasmonate(10 uM, 3hours) ME00337 1007965964#845
RIKEN-Goda Sample10 IAA(1 uM, 1hours) ME00336 1007965859#821
RIKEN-Goda Sample2 IAA(1 uM, 30minutes) ME00336 1007965859#822
RIKEN-Goda Sample18 IAA(1 uM, 3hours) ME00336 1007965859#823
RIKEN-Goda Sample13 ABA(10 uM, 1hours) ME00333 1007964750#594
RIKEN-Goda Sample5 ABA(10 uM, 30minutes) ME00333 1007964750#595
RIKEN-Goda Sample21 ABA(10 uM, 3hours) ME00333 1007964750#596
RIKEN-Goda_Sample12 Col-0GA3(1 uM, 1hours) ME00343w 1007966175#902
RIKEN-Goda_Sample20 Col-0GA3(1 uM, 3hours) ME00343w 1007966175#904
RIKEN-Goda_Sample26 ga1-5GA3(1 uM, 30minutes) ME00343m 1007966175#906
RIKEN-Goda_Sample28 ga1-5GA3(1 uM, 1hours) ME00343m 1007966175#908
RIKEN-Goda_Sample30 ga1-5GA3(1 uM, 3hours) ME00343m 1007966175#910
RIKEN-Goda_Sample4 Col-0GA3(1 uM, 30minutes) ME00343w 1007966175#911
RIKEN-Goda Sample9 6-deoxotyphasterol(1 uM, 3hours) ME00343w 1007999438#1318
RIKEN-Goda Sample16 Col-0Brassinolide(10 nM, 1hours) ME00335w 1007966053#861
RIKEN-Goda Sample34 det2-1Brassinolide(10 nM, 1hours) ME00335m 1007966053#862
RIKEN-Goda Sample32 det2-1Brassinolide(10 nM, 30minutes) ME00335m 1007966053#863
RIKEN-Goda Sample8 Col-0Brassinolide(10 nM, 30minutes) ME00335w 1007966053#864
RIKEN-Goda Sample24 Col-0Brassinolide(10 nM, 3hours) ME00335w 1007966053#865
RIKEN-Goda Sample36 det2-1Brassinolide(10 nM, 3hours) ME00335m 1007966053#866
RIKEN-Goda Sample2 campestanol(10 uM, 3hours) ME00352 1007999438#1311
RIKEN-Goda Sample3 6-deoxocathasterone(1 uM, 3hours) ME00352 1007999438#1312
RIKEN-Goda Sample4 cathasterone(1 uM, 3hours) ME00352 1007999438#1313
RIKEN-Goda Sample5 6-deoxoteasterone(1 uM, 3hours) ME00352 1007999438#1314
RIKEN-Goda Sample6 teasterone(1 uM, 3hours) ME00352 1007999438#1315
RIKEN-Goda Sample7 3-dehydro-6-deoxoteasterone(1 uM, 3hours) ME00352 1007999438#1316
RIKEN-Goda Sample8 3-dehydroteasterone(1 uM, 3hours) ME00352 1007999438#1317
RIKEN-Goda Sample10 typhasterol(1 uM, 3hours) ME00352 1007999438#1319
RIKEN-Goda Sample11 6-deoxocastasterone(1 uM, 3hours) ME00352 1007999438#1320
RIKEN-Goda Sample12 castasterone(100 nM, 3hours) ME00352 1007999438#1321
RIKEN-Goda Sample13 brassinolide(1 uM, 3hours) ME00352 1007999438#1322
RIKEN-Goda Sample9 brassinazole 91(10 uM, 3hours) ME00352 1008205330#1416
Kiba Sample2 Col-0t-zeatin(20 uM, 3hours) ME00356 1008031453#1326
Kiba Sample4 ARR22-oxt-zeatin(20 uM, 3hours) ME00356 1008031453#1328
RIKEN-Nakabayashi_Sample1 - ME00351 1007967394#1298
RIKEN-Nakabayashi_Sample2 water(48hours) ME00351 1007967394#1299
RIKEN-Nakabayashi_Sample3 ABA(3 uM, 24hours) ME00351 1007967394#1300
RIKEN-Nakabayashi_Sample4 ABA(30 uM, 24hours) ME00351 1007967394#1301
RIKEN-Li Sample1 water(3hours) ME00350 1007967381#1292
RIKEN-Li Sample2 water(6hours) ME00350 1007967381#1293
RIKEN-Li Sample3 water(9hours) ME00350 1007967381#1294
RIKEN-Li Sample4 gibberellin(5 uM, 3hours) ME00350 1007967381#1295
RIKEN-Li Sample5 gibberellin(5 uM, 6hours) ME00350 1007967381#1296
RIKEN-Li Sample6 gibberellin(5 uM, 9hours) ME00350 1007967381#1297

devlopment


Deveopment

Slide header Brief description Experiment ID TAIR experiment ID
Col-0_cotyl Col-0age(7 days)cotyledon ME00319 1006710873#430
Col-0_hyp Col-0age(7 days)hypocotyl ME00319 1006710873#431
Col-0_root7 Col-0age(7 days)root ME00319 1006710873#432
Col-0_veg_leaf Col-0age(7 days)leafshoot apex ME00319 1006710873#433
Col-0_leaf_1-2 Col-0age(7 days)leaf ME00319 1006710873#434
Col-0_shoot_veg Col-0age(7 days)shootshoot apex ME00319 1006710873#435
Col-0_seedl_green Col-0age(7 days)shoot ME00319 1006710873#436
Col-0_shoot_trans Col-0age(14 days)inflorescenceshoot ME00319 1006710873#437
Col-0_root17 Col-0age(17 days)root ME00319 1006710873#438
Col-0_roset4_1l Col-0age(10 days)young leaf ME00319 1006710873#439
gl1T_roset4_1l SALK_039478age(10 days)young leaf ME00319 1006710873#440
Col-0_roset2 Col-0age(17 days)mature leaf ME00319 1006710873#441
Col-0_roset4 Col-0age(17 days)mature leaf ME00319 1006710873#442
Col-0_roset6 Col-0age(17 days)mature leaf ME00319 1006710873#443
Col-0_roset8 Col-0age(17 days)young leaf ME00319 1006710873#444
Col-0_roset10 Col-0age(17 days)young leaf ME00319 1006710873#445
Col-0_roset12 Col-0age(17 days)young leaf ME00319 1006710873#446
gl1T_rosett12 SALK_039478age(17 days)young leaf ME00319 1006710873#447
Col-0_lf7_petio Col-0age(17 days)petiole ME00319 1006710873#448
Col-0_lf7_prox Col-0age(17 days)young leaf ME00319 1006710873#449
Col-0_lf7_distal Col-0age(17 days)young leaf ME00319 1006710873#450
Col-0_whole21d Col-0age(21 days)whole plant ME00319 1006710873#451
Col-0_whole22d Col-0age(22 days)whole plant ME00319 1006710873#452
Col-0_whole23d Col-0age(23 days)whole plant ME00319 1006710873#453
Col-0_senescent Col-0age(35 days)senescence leaf ME00319 1006710873#454
Col-0_cauline Col-0age(21+ days)cauline leaf ME00319 1006710873#455
Col-0_stem_2nd Col-0age(21+ days)internodeshoot ME00319 1006710873#456
Col-0_stem_1st Col-0age(21+ days)nodeshoot ME00319 1006710873#457
Col-0_inflo Col-0age(21 days)inflorescencestage 1-6 flower ME00319 1006710873#458
Col-0_flow9 Col-0age(21+ days)stage 9 flower ME00319 1006710873#459
Col-0_flow10/11 Col-0age(21+ days)stage 10-11 flower ME00319 1006710873#460
Col-0_flow12 Col-0age(21+ days)stage 12 flower ME00319 1006710873#461
Col-0_flow12_sepal Col-0age(21+ days)sepal ME00319 1006710873#462
Col-0_flow12_petal Col-0age(21+ days)petal ME00319 1006710873#463
Col-0_flow12_stam Col-0age(21+ days)stamen ME00319 1006710873#464
Col-0_flow12_carp Col-0age(21+ days)carpel ME00319 1006710873#465
Col-0_flow15 Col-0age(21+ days)stage 15 flower ME00319 1006710873#466
Col-0_flow15_pedi Col-0age(21+ days)pedicelstage 15 flower ME00319 1006710873#467
Col-0_flow15_sepal Col-0age(21+ days)sepalstage 15 flower ME00319 1006710873#468
Col-0_flow15_petal Col-0age(21+ days)petalstage 15 flower ME00319 1006710873#469
Col-0_flow15_stam Col-0age(21+ days)stage 15 flowerstamen ME00319 1006710873#470
Col-0_flow15_carp Col-0age(21+ days)carpelstage 15 flower ME00319 1006710873#471
clv3-7_inflor clv3-7age(21+ days)stage 1-6 flower ME00319 1006710873#472
lfy-12_inflor lfy-12age(21+ days)stage 1-7 flower ME00319 1006710873#473
ap1-15_inflor ap1-15age(21+ days)stage 1-8 flower ME00319 1006710873#474
ap2-6_inflor ap2-6age(21+ days)stage 1-9 flower ME00319 1006710873#475
ap3-6_inflor ap3-6age(21+ days)stage 1-10 flower ME00319 1006710873#476
ag-12_inflor SALK_014999age(21+ days)stage 1-11 flower ME00319 1006710873#477
ufo-1_inflor ufo-1age(21+ days)stage 1-12 flower ME00319 1006710873#478
clv3-7_flow12 clv3-7age(21+ days)stage 12 flower ME00319 1006710873#479
lfy-12_flow12 lfy-12age(21+ days)stage 12 flower ME00319 1006710873#480
ap1-15_flow12 ap1-15age(21+ days)stage 12 flower ME00319 1006710873#481
ap2-6_flow12 ap2-6age(21+ days)stage 12 flower ME00319 1006710873#482
ap3-6_flow12 ap3-6age(21+ days)stage 12 flower ME00319 1006710873#483
ag-12_flow12 SALK_014999age(21+ days)stage 12 flower ME00319 1006710873#484
ufo-1_flow12 ufo-1age(21+ days)stage 12 flower ME00319 1006710873#485
Col-0_pollen Col-0age(6 weeks)pollen ME00319 1006710873#486
Col-0_sil3 Col-0age(8 weeks)globular embryo ME00319 1006710873#487
Col-0_sil4 Col-0age(8 weeks)heart embryo ME00319 1006710873#488
Col-0_sil5 Col-0age(8 weeks)triangle embryo ME00319 1006710873#489
Col-0_seed6 Col-0age(8 weeks)torpedo embryo ME00319 1006710873#490
Col-0_seed7 Col-0age(8 weeks)walking-stick seed ME00319 1006710873#491
Col-0_seed8 Col-0age(8 weeks)early curled cotyledon ME00319 1006710873#492
Col-0_seed9 Col-0age(8 weeks)early green cotyledon ME00319 1006710873#493
Col-0_seed10 Col-0age(8 weeks)green cotyledon ME00319 1006710873#494
Col-0_roset7 Col-0age(7 days)early rosette ME00319 1006710873#495
Col-0_roset14 Col-0age(14 days)mid rosette ME00319 1006710873#496
Col-0_roset21 Col-0age(21 days)late rosette ME00319 1006710873#497
Col-0_leaf Col-0age(15 days)expanding leaf ME00319 1006710873#498
Col-0_flower Col-0age(4 weeks)stage 12 flower ME00319 1006710873#499
Col-0_root_MS1 Col-0age(15 days)root ME00319 1006710873#500
Col-0_root_GM-8 Col-0age(8 days)root ME00319 1006710873#501
Col-0_root_GM5-8 Col-0age(8 days)root ME00319 1006710873#502
Col-0_seedl_GM Col-0age(8 days)seedlingshoot ME00319 1006710873#503
Col-0_seedl_GM5 Col-0age(8 days)seedlingshoot ME00319 1006710873#504
Col-0_root_GM-21 Col-0age(21 days)root ME00319 1006710873#505
Col-0_root_GM5-21 Col-0age(21 days)root ME00319 1006710873#506
Col-0_sedlGM-21 Col-0age(21 days)seedlingshoot ME00319 1006710873#507
Col-0_sedlGM5-21 Col-0age(21 days)seedlingshoot ME00319 1006710873#508

ABA_classes


ABA signaling Related Classes



Class Description Reference/Source
Time_IL Time course expression group (late upregulation)
Time_IRC Time course expression group (rapid and constant upregulation)
Time_IRT Time course expression group (rapid and transient upregulation)
Tissue_IMG Genes upregulated in both mesophyll and gaurd cell Leonhardt et al (2004)
Tissue_IMO Genes upregulated in mesophyll but not in gaurd cell
Tissue_IGO Genes upregulated in gaurd cell but not in mesophyll
Tissue_RGO Genes downregulated in gaurd cell but not in mesophyll
Tissue_RMO Genes downregulated in mesophyll but not in gaurd cell
Suzuki_Group_1 ABA_dependent_Activated_VP1_enhanced Suzuki et al (2003)
Suzuki_Group_2 ABA_dependent_Activated_VP1_suppressed
Suzuki_Group_3 ABA_dependent_repressed_VP1_enhanced
Suzuki_Group_4 ABA_dependent_repressed_VP1_suppressed
Suzuki_Group_5 ABA_regulated_Activated
Suzuki_Group_6 ABA_regulated_Repressed
Suzuki_Group_7 VP1_AND_ABA_dependent_Repressed
Suzuki_Group_8 VP1_AND_ABA_dependent_activated
Suzuki_Group_9 VP1_activated_ABA_activated
Suzuki_Group_10 VP1_activated_ABA_repressed
Suzuki_Group_11 VP1_dependent_Activated_ABA_enhanced
Suzuki_Group_12 VP1_dependent_Activated_ABA_suppressed
Suzuki_Group_13 VP1_dependent_Repressed_ABA_enhanced
Suzuki_Group_14 VP1_dependent_Repressed_ABA_suppressed
Suzuki_Group_15 VP1_regulated_Activated
Suzuki_Group_16 VP1_regulated_Repressed
Suzuki_Group_17 VP1_repressed_ABA_activated
Suzuki_Group_18 VP1_repressed_ABA_repressed
Xin1 Genes induced by ABA in wild-type (Ws) but not in rop10-1 Xin et al (2005)
Xin2 Genes induced by ABA in rop10-1but not in wild-type (Ws)
Xin3 Genes with higher expression in ABA-treated rop10-1 than in ABA-treated Ws
R1 Repressed in 1 experiments Classes derived from comparison of ABA medaited gene induction and repression in different experiemnts
R2 Repressed in 2 experiments
R3 Repressed in 3 experiments
I1 Induced in 1 experiments
I2 Induced in 2 experiments
I3 Induced in 3 experiments
I4 Induced in 4 experiments
I5 Induced in 5 experiments
IR Genes induced and repressed by ABA