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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1714 fasta sequence
[AACGAGGTTCGTCGCCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGCGCA-CCAG-T-G-ACGGGAAGACTCCACCGCCGCGCCACCACCTCGCCGGGATCCCCTACGACCACCACTGCCGCGCAGCACC-GTCGCCGTCACGACCACCATCGCCGCCGCCGCCAACGTCAAGCAGAGC-ACGACAACGACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGATGGCTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAAGGAGATAACTACGAAGAATGGAAAAGAGAACTCGACCTTGCTTTTATC-TTGGGAGAGGTGGACTGGGTGTTGACTACCCCATGTCCTATAGAACCTGCTGAAATTTTCAGAGGTGAAAAAGAGTCAGATGCTGAATGGCAAAAGAGAGAGA-GGGACAATGCTTCCCTCATCATGTCGTATGACATTGAGCATGCGAAATGGTCTTCAGCCAACAAGAATTGTTTGGCTGCGGTAAAGAACACGATTGAGCCAACCATATTGGGCTCAATCCCAGAGTATGACACTGTCTCTAAGTACCTCGAAAGTATAAAGAGCCAGTTTAGTGGTTCTTCAAAGTTTTATGCGACACAGCTGATAAAGCAGCTTGTTACAGAGAGGTACCATGGAGATGGTGTAAAAGACCACATTCTTAGGATGAGCAA-CATGGCTTCC-AAATTGAAGCAAAAAGATTTGGGCATCTCAGATGACTTTCTGGTCCATCTGGTTTTGTCCTCATTGCCAAAGAACTTTGACAACCTTGTTGTCAACTACAAAATAAGTACAGAGAATTGGAATATTGAAGAGCTCATCTCTAATTGTGTGCAAGAGGAGGAAAGACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAGCAACAGTTTACAGTTGAGACAAGATCAGTGTCTACATTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGGATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATAGAGTTGAAGCAAAAGTTGAGGCTGTTGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGACGTTTTTATGTCCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTATAATAATGAATGTATTGGTCTTATGTTGCAAGATCAGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGCCTTGTTTTTCCTTACCAAAGGGCAATTTCCCGCCCTTTAAATTAATTTCCCCTTTTGGGGAGCCTTTTAACATTTCATTGCCCGTCTTTTTACACCGTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGAACAAATTCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTTTCCTTCCGGAATTTAAAGGTTACCCCCTTTAAAAAAA]
[+] EMBL AK100781 [AACGAGGTTCGTCGCCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGCGCAGCCAG T G GCGGGAAGACTCCACCGCCGCGCCACGACCTCGCCGGGATCCCCCACGACCACCACTGCCGCGCAGCACC GTCGCCGTCACGACCGCCATCGCCGCCGCCGCCCACGTCAAGCAGAGCGACGACAACAACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGGTGGCTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAAGGAGATAACTACGAAGAATGGAAAAGAGAACTCGACCTTGCTTTTATC TTGGGAGAGGTGGACTGGGTGTTGACTACCCCATGTCCTATAGAACCTGCTGAAATTTTCAGAGGTGAAAAAGAGTCAGATGCTGAATGGCAAAAGAGAGAGA GGGACAATGCTTCCCTCATCATGTCGTATGACATTGAGCATGCGAAATGGTCTTCAGCCAACAAGAATTGTTTGGCTGCGGTAAAGAACACGATTGAGCCAACCATATTGGGCTCAATCCCAGAGTATGACACTGTCTCTAAGTACCTCGAAAGTATAAAGAGCCAGTTTAGTGGTTCTTCAAAGTTTTATGCGACACAGCTGATAAAGCAGCTTGTTACAGAGAGGTACCATGGAGATGGTGTAAAAGACCACATTCTTAGGATGAGCAA TATGGCTTCC AAATTGAAGCAAAAAGATTTGGGCATCTCAGATGACTTTCTGGTCCATCTGGTTTTGTCCTCATTGCCAAAGAACTTTGACAACCTTGTTGTCAACTACAGAATAAGTACAGAGAATTGGAATATTGAAGAGCTCATCTCTAATTGTGTGC AGGAGGAAAGACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAGCAACAGTTTACAGTTGAGACAAGATCAGTGTCTACATTGCAAGAA AAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGGATTCCGTTCAATGAGGACTATGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATGGAGTTGAAGCAAAAGTTGAGGC TGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGACGTTTTTATGTTCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAGTGGCAAATGTGAACTTTGGTATAATAATGAATGTATTGGTCTTGTGTTGCAAGATCA ]
[+] EMBL OSC102071 [ AGGTTCGTCGCCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGCGCA CAG T GTACGGGAAGACTCCACCGNCGCGCCACCACCTCGCCGGGATCCCCTACGACCACCACTGCCGCGCAG ACCNGTCGCCGTCACGACCACCATCGCCGNCGCCGNCAACGTCAAGCAGAGC ACGACAACNACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGATGGNTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAAGGAGATAACTACGAAGAATGGAAAAGAGAACTCGACCTTGCTTTTATCTTTGGGAG ]
[+] EMBL AU091655 [ GGGGCGCA CAGG T G ACGGGAAGACTCCACCGCCGCGCCACCACCTCGCCGGGATCCCCTACGACCACCACTGCCGCGCA CACC GTCGCCGTCACGACCACCATCGCCGCCGCCGCCAACGTCAAGCAGAGC ACGACAACGACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGATGGCTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAA GAGATAACTACGAAGAATGGAAAAGAGAACTCGACCTTGCTTTTATC TTGGGAGAGGTGGACTGGGTGTTGACTANCCCATGTCCTATAGAACCTGCTGAAATTTTCAGAGGTGAAAAAGAGTCAGATGCTGNATGGGCAAAGAGAGAGANGGGAC ATGCTTNCCTCATCATGTC ]
[+] EMBL AU091650 [ GGGGCGCA CAGNTNG ACGGGAAGACTCCACCGCCGCGCCACCACCTCGCCGGGATCCCCTACGACCACCACTGCCGCGCA NACC GTCGCCGTCACGACCACCATCGCCGCCGCCGCCAACGTCAAGCAGAGC ACGACAACGACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGATGGCTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAAGGAGATAACTACGAAGAATGGAAAAGAGAACTCGACCTTGCTTTTATC TTGGGAGAGGTGGACTGGGTGTTGACTACCCCATGTCCTATAGAACCTGCTGAAATTTTCAGAGGTGAAAAAGAGTCAGATGCTGAATGGCAAAAGAGAGAGA GGGACA ]
[+] EMBL AU091651 [ gnTGTAAAAGACCACATTCTTAGGATGAGCAACCATGGCTTCC AAATTGAAGCAAAAAGATTTGGGCATCTCAGATGACTTTCTGGTCCATCTGGTTTTGTCCTCATTGCCAAAGAACTTTGACAACCTTGTTGTCAACTACAAAATAAGTACAGAGAATTGGAATATTGAAGAGCTCATCTCTAATTGTGTGCAAGAGGAGGAAAGACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAGCAACAGTTTACAGTTGAGACAAGATCAGTGTCTACATTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGGATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATAGAGTTGAAGCAAAAGTTGAGGCTGTTGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGACGTTTTTATGTCCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTATAATAATGAATGTATTGGTCTTATGTTGCAAaaaaa ]
[+] EMBL AU091656 [ tTTAGGNTGAGCAC CATGGCTTCCNAAATTGAAGCAAAAAGATTTGGNCATCTCAGATGACTTTCTGGTCNATCTGGTTTTGTCCTCATTGCCAAAGAACTTTGACAACCTTGTTGTCAACTACAAAATAAGTNCAGAGAATTGGAATATTGAAGAGCTCATCTCTAATTGTGTGCAAGAGGAGGAAAGACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAGCAACAGTTTACAGTTGAGACAAGATCAGTGTCTACATTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGGATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATAGAGTTGAAGCAAAAGTTGAGGCTGTTGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGACGTTTTTATGTCCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTATAATAATGAATGTATTGGTCTTATGTTGCAAaaaaa ]
[+] EMBL AU091504 [ AAAGNAAAACAGCCTCAGCATNTGCCTCAGAAGCAACAGTTTNCAGTTGAGACAAGATCAGTGTCTACATTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGGATTCCGTTCAATGNGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATAGAGTTGAAGCAAAAGTTGAGGCTGTTGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGACGTTTTTATGTCCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTATAATAATGAATGTATTGGTCTTNTGTTGCAAGATCAGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF314696 [ AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGCCTTGTTTTTCCTTACCAAAGGGCAATTTCCCGCCCTTTAAATTAATTTCCCCTTTTGGGGAGCCTTTTAACATTTCATTGCCCGTCTTTTTACACCGTCGGAATTGGAAAACCCTTGCCTTTCCCCAATTTATTCCCTTTGAACAAATTCCCCTTTTCCCCACTTGGCTTAATACCAAAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTTTCCTTCCGGAATTTAAAGGTTACCCCCTTTAAAAAAA]
consensusID : consensus_11735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[GACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAACAACAGTTTACAGTTGAGACAAGATCAGTGTCTACACTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAAGAATCTCATTATGATTGGTTATTCTAGATCCACATGGTGGATTTATTCTGGAGCAACTATTCATGTGTGTAATTGTTTAAAGGGATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCTAATGGAGATAAAGCAAAAGTTGAAGCTGTTGGAGATTTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGATGTTTTTATGTCCATTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTCTGATAGATATGAAATGGCAAATGTGAA]
[-] EMBL CB636637 [GACACAAAGAGACCAATGGTGACTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGAAAAACAGCCTCAGCATCTGCCTCAGAAACAACAGTTTACAGTTGAGACAAGATCAGTGTCTACACTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAAGAATCTCATTATGATTGGTTATTCTAGATCCACATGGTGGATTTATTCTGGAGCAACTATTCATGTGTGTAATTGTTTAAAGGGATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCTAATGGAGATAAAGCAAAAGTTGAAGCTGTTGGAGATTTTCGCCTAGAACTCGCGAATGGCTTCACACTTTTACTTCCAGATGTTTTTATGTCCATTCTTTGCAAAGAAACTTGATAATAAGTGTATCCAAATTGGATTCTGATAGATATGAAATGGCAAATGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11735#0 AACGAGGTTCGTCGCCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGC 60
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GCACCAGTGACGGGAAGACTCCACCGCCGCGCCACCACCTCGCCGGGATCCCCTACGACC 120
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 ACCACTGCCGCGCAGCACCGTCGCCGTCACGACCACCATCGCCGCCGCCGCCAACGTCAA 180
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GCAGAGCACGACAACGACGATGGCTGGGACTTCCTCTTCATCCAACGCGTCAACCGATGG 240
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 CTACTCCTTGATGGGTTACATTAAAGATATTCCGACCCTGAAAGGAGATAACTACGAAGA 300
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 ATGGAAAAGAGAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTGTTGACTAC 360
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 CCCATGTCCTATAGAACCTGCTGAAATTTTCAGAGGTGAAAAAGAGTCAGATGCTGAATG 420
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GCAAAAGAGAGAGAGGGACAATGCTTCCCTCATCATGTCGTATGACATTGAGCATGCGAA 480
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 ATGGTCTTCAGCCAACAAGAATTGTTTGGCTGCGGTAAAGAACACGATTGAGCCAACCAT 540
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 ATTGGGCTCAATCCCAGAGTATGACACTGTCTCTAAGTACCTCGAAAGTATAAAGAGCCA 600
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GTTTAGTGGTTCTTCAAAGTTTTATGCGACACAGCTGATAAAGCAGCTTGTTACAGAGAG 660
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GTACCATGGAGATGGTGTAAAAGACCACATTCTTAGGATGAGCAACATGGCTTCCAAATT 720
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GAAGCAAAAAGATTTGGGCATCTCAGATGACTTTCTGGTCCATCTGGTTTTGTCCTCATT 780
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GCCAAAGAACTTTGACAACCTTGTTGTCAACTACAAAATAAGTACAGAGAATTGGAATAT 840
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 TGAAGAGCTCATCTCTAATTGTGTGCAAGAGGAGGAAAGACACAAAGAGACCAATGGTGA 900
consensus_11735#1 --------------------------------------GACACAAAGAGACCAATGGTGA 22
**********************
consensus_11735#0 CTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGA 960
consensus_11735#1 CTCCATTAACCTTGTCAAAGATAACAAGGAAAAGAGCCACAGGTCACCCTCCTCAAAAGA 82
************************************************************
consensus_11735#0 AAAACAGCCTCAGCATCTGCCTCAGAAGCAACAGTTTACAGTTGAGACAAGATCAGTGTC 1020
consensus_11735#1 AAAACAGCCTCAGCATCTGCCTCAGAAACAACAGTTTACAGTTGAGACAAGATCAGTGTC 142
*************************** ********************************
consensus_11735#0 TACATTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCA 1080
consensus_11735#1 TACACTGCAAGAAGACAAGACATTCCAAGAAAGATCATCCTGACTTCCTGACAGTGATCA 202
**** *******************************************************
consensus_11735#0 TGGCAAAGAAAGG----------------------------------------------- 1093
consensus_11735#1 TGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAAGAATCTCATTATGATTGGTTATT 262
*************
consensus_11735#0 ------------------------------------------------------------
consensus_11735#1 CTAGATCCACATGGTGGATTTATTCTGGAGCAACTATTCATGTGTGTAATTGTTTAAAGG 322
consensus_11735#0 GATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCCAATAGAG 1153
consensus_11735#1 GATTCCGTTCAATGAGGACTACGCAAAGAAGTGAAAGATCCATTAGAGTTGCTAATGGAG 382
**************************************************** *** ***
consensus_11735#0 TTGAAGCAAAAGTTGAGGCTGTTGGAGATCTTCGCCTAGAACTCGCGAATGGCTTCACAC 1213
consensus_11735#1 ATAAAGCAAAAGTTGAAGCTGTTGGAGATTTTCGCCTAGAACTCGCGAATGGCTTCACAC 442
* ************* ************ ******************************
consensus_11735#0 TTTTACTTCCAGACGTTTTTATGTCCCTTCTTTGCAAAGAAACTTGATAATAAGTGTATC 1273
consensus_11735#1 TTTTACTTCCAGATGTTTTTATGTCCATTCTTTGCAAAGAAACTTGATAATAAGTGTATC 502
************* ************ *********************************
consensus_11735#0 CAAATTGGATTTTGATAGATATGATTGCCATTTTGGAAATGGCAAATGTGAACTATGGTA 1333
consensus_11735#1 CAAATTGGATTCTGATAGATATGA-------------AATGGCAAATGTGAA-------- 541
*********** ************ ***************
consensus_11735#0 TAATAATGAATGTATTGGTCTTATGTTGCAAGATCAGCTTTAAAAAAAAAAAAAAAAAAA 1393
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCT 1453
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 TGCCTTGTTTTTCCTTACCAAAGGGCAATTTCCCGCCCTTTAAATTAATTTCCCCTTTTG 1513
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 GGGAGCCTTTTAACATTTCATTGCCCGTCTTTTTACACCGTCGGAATTGGAAAACCCTTG 1573
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 CCTTTCCCCAATTTATTCCCTTTGAACAAATTCCCCTTTTCCCCACTTGGCTTAATACCA 1633
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 AAAAGGCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTTTCCTTCCGGAATTTAA 1693
consensus_11735#1 ------------------------------------------------------------
consensus_11735#0 AGGTTACCCCCTTTAAAAAAA 1714
consensus_11735#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||