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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence
[CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAAGCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAACACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAACAGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTC-AATGTTTATCGAGCTTTATATNGCAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGCGGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTGTGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG]
[+] EMBL CB634447 [CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAAGCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAACACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAACAGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTC AATGTTTATCGAGCTTTATATNG ]
[-] EMBL CB634448 [ TGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGCCCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTCAAATGTTTATCGAGCTTTATATGACAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGCGGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTGTGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG]
consensusID : consensus_6036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[CACGAGGCTAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTTCCACTTTTCAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGAATGTTAAGTACGCCTTTATTCTCCCAAGAAAATGTGGAACTGCATGTTGCATGTTGGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTGCTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATAATTTGCTGGCAATTGTGGCATACTATAAAGCCCATGTCCTGCTTTACCTTGGACAGATAATAAGAGCATTGTATATACCCATAGGTGCACTTACAATTATCCCTTTTTCTTGGTGTGTGCAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGTAATAATGATGTTGCCCTCTTGATAAAAGTTATTCTCTCTTCAGGTTTTCTTTGCATATATTTCAGATTTTTATTGATTGCACATCAGTGACTA]
[+] EMBL CF307251 [CACGAGGCTAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTTCCACTTTTCAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGAATGTTAAGTACGCCTTTATTCTCCCAAGAAAATGTGGAACTGCATGTTGCATGTTGGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTGCTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATAATTTGCTGGCAATTGTGGCATACTATAAAGCCCATGTCCTGCTTTACCTTGGACAGATAATAAGAGCATTGTATATACCCATAGGTGCACTTACAATTATCCCTTTTTCTTGGTGTGTGCAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGTAATAATGATGTTGCCCTCTTGATAAAAGTTATTCTCTCTTCAGGTTTTCTTTGCATATATTTCAGATTTTTATTGATTGCACATCAGTGACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6036#0 CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAA 60
consensus_6036#1 ------------------------------------------------------------
consensus_6036#0 GCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAA 120
consensus_6036#1 ------------------------------------------------------------
consensus_6036#0 CACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAAC 180
consensus_6036#1 ------------------------------------------------------------
consensus_6036#0 AGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTT 240
consensus_6036#1 ------------------------------------------------------------
consensus_6036#0 TTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAAC 300
consensus_6036#1 ----------------------------------------------------CACGAGGC 8
* *
consensus_6036#0 TAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAG 360
consensus_6036#1 TAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTT 68
******************* ************************************
consensus_6036#0 ATAGTTTTGCAATTGACTTGGC--ATATTTACTGTTAGTGGCAGCGATCATGGTTATCAC 418
consensus_6036#1 CCACTTTT-CAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGA 127
* **** ** * * *** ** ***** *** * * * **
consensus_6036#0 TCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAA 478
consensus_6036#1 ATGTTAAGTACGCCTTTATTC----TCCCAAGA-AAATGTGGAACTGCATGTTGCATGTT 182
** * * ** * ** ** * ** ** ****** ** *
consensus_6036#0 ATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAAC 538
consensus_6036#1 GGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTG 242
* ** * ****** * * * * * * *
consensus_6036#0 TGTTCGATAAAATCC---CAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGC 595
consensus_6036#1 CTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATA----ATTTGCTGG 298
* ******* ** * ** * * *** *** **** *
consensus_6036#0 CTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGA 655
consensus_6036#1 C----AATTGTGGCATACTATAAAGCCCA--TGTCCTGCTTTACCTTGGACAGATAATAA 352
* ** ** ** **** * * ** *** * * * * * *
consensus_6036#0 GAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAAT 715
consensus_6036#1 GAGCATTGTATATACCCATAGGTGC-----ACTTACAATTATCCCTTT----TTCTTGGT 403
** * *** *** ** ** * * * * ** *** * * *
consensus_6036#0 GTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTCAATG 775
consensus_6036#1 GTGTGCAG-AAAGATAGTTTTGCAATTGACTTGGCATAT-TTACTGTTAG--TGGCAGCG 459
** *** ** * *** * ***** ** ** * ** * ** *
consensus_6036#0 TTTATCGAGCTTTATATNGCAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGC 835
consensus_6036#1 ATCATGGTTATCACTCTTTCAAGTAATAATGATG--TTGCCCTCTTGA-----TAAAAGT 512
* ** * * * * *** * ** * ** **** * ** * ******
consensus_6036#0 GGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTG 895
consensus_6036#1 TATTCT-------CTCTTCAGGTTTTCTTTGCATATATTTCAGA-TTTTTATTGATTGCA 564
** * *** ** ** * * *** ** ** * * *** ***
consensus_6036#0 TGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG 955
consensus_6036#1 CATCAGTGACTA------------------------------------------------ 576
* * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||