cluster # 6282

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Oryza sativa
cluster # 6282 cluster # 6282 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6282#0 length = 609 sequences # 2

consensus_6282#1 length = 331 sequences # 2

consensusID : consensus_6282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAAAAA-----AA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTCTTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGGCAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAATTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCACCTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGGACCGGCTCGTTTTTGTTG]

[+] EMBL CA753785             [CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAAAAA     AA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA756373             [             ATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAACAACTGTGAACNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTCTTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGGCAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAATTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCACCTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGGACCGGCTCGTTTTTGTTG]




>consensus_6282#0
CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGAT
TGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGG
AACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCA
TTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTCTTTGGGAAA
AACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGGCAATTGAAT
TTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAATTGGGCCCC
CCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCACCTTTGCCTC
CCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGGACCGGCTCG
TTTTTGTTG

consensusID : consensus_6282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 331
fasta sequence

                              [CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAAAAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA]

[+] EMBL CA754631             [CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAAAAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA]
[+] EMBL CA755873             [       TTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACAAGAAAGAAAAAAAAAC GGGCAAAAGCCCAAAAAAAAAAAAAAAAAAAA]




>consensus_6282#1
CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTG
AAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAA
TTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTC
TTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACG
GATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAAAAACGG
GGCAAAAGCCCGCACTAAANAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6282#0      CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGAT 60
consensus_6282#1      --CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGAT 58
                        ****** ***  ****  ************************************ ***

consensus_6282#0      TGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATC-------ATTC 113
consensus_6282#1      TGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCC 118
                      ************* ************** ** ********** ******       ** *

consensus_6282#0      AACATGGAACAAGATCAACGGCAAAAATAATCA-ACGATTATCCG-TCGATGAACTTTGT 171
consensus_6282#1      AATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGT 178
                      **   * * *** **      ***   * **   **    *** * *****  * * ***

consensus_6282#0      CTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAAC 231
consensus_6282#1      ---TCTTCGTTGTTTTGTT-TCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGT 234
                         * *** ******** * *  ****  *   *  ** ** **  * *           

consensus_6282#0      ACGAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 291
consensus_6282#1      TTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAA 294
                         * **   * *  * * **** ****  *** ********** *  * *** ******

consensus_6282#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTC 351
consensus_6282#1      AAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA----------------------- 331
                      ***      ****      *  *** ***********                       

consensus_6282#0      TTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGG 411
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      CAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAA 471
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      TTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCAC 531
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      CTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGG 591
consensus_6282#1      ------------------------------------------------------------
                                                                                  

consensus_6282#0      ACCGGCTCGTTTTTGTTG 609
consensus_6282#1      ------------------