cluster # 6724

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6724 cluster # 6724 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6724#0 length = 551 sequences # 3

consensus_6724#1 length = 349 sequences # 1

consensusID : consensus_6724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 551
fasta sequence

                              [TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGTGAA-TGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGAC-CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCAC-TGCCACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGCACGCCACCAGTC]

[+] EMBL CF310095             [TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGAC CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCAC TGCCACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGCACGCCACCAGTC]
[-] EMBL BI807368             [                   tttttttTTTGAGCAAAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTACACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGGGAA TGTCCTCTTTAGCTTGTCAAGGATACCAGCAG CTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGACGACACTCCCTAAGTTTTGTG GGGCGTACATAaca                                                                                           ]
[-] EMBL BI801229             [                                  AAATTCATAGCACAAAATGTGCTTCAGACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAGAAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAACTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTGGTGAA TGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCCTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCATCCTCGA GA  CTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCACGTG CACCG ATTCTCTTT                                                          ]




>consensus_6724#0
TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCA
GACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAG
AAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAA
CTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAA
ATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAA
CAGGAGTAGTGCGTTTGGTGAATGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCC
TCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCAT
CCTCGACGACCTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCACTGCCA
CCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGCA
CGCCACCAGTC

consensusID : consensus_6724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAAAATCTGAAAANTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCTTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCATCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTCGTACGGGA]

[-] EMBL AA754456             [TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAAAATCTGAAAANTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCTTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCATCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTCGTACGGGA]




>consensus_6724#1
TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAAAATCTGAAAANTGTAAACTTATGTA
CCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAAATGAACACCCCCAAC
CTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAACAGGAGTAGTGCGTT
TTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTCTTCGGGGCCTTNGAA
GTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCATCCTNGACGACCTCC
CTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTCGTACGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6724#0      TTTTTAGAGGTAGAAAATCAATCTGATTTGAGCAAAATTCATAGCACAAAATGTGCTTCA 60
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      GACTTCATGATCAGGTAGAAAAGACCTGCAGTAACAAGTGACCGGGACTGCAAAAGTCAG 120
consensus_6724#1      ------------------------------------------------------------
                                                                                  

consensus_6724#0      AAGAACGGGGAAGAACTTTCACTCTGGAAAGACAACACCTTCCACTACTTACTCTGAAAA 180
consensus_6724#1      -------------TTTTTTTTNTTTTTTTGTTTNGNNTNNTTTANAAA--AATCTGAAAA 45
                                      ***   * *               *  *  *   * ********

consensus_6724#0      CTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAA 240
consensus_6724#1      NTGTAAACTTATGTACCGAACCAAAGAGTAGACATATATGCAGCTCAATATATACACCAA 105
                       ***********************************************************

consensus_6724#0      ATGAACATCCCCAACCTTATTCGTCTAGTTACATATCCGACGCACCCAGCCCCGGACTAA 300
consensus_6724#1      ATGAACACCCCCAACCTTATTCGTCTAGTNACATATCNGACGCACCCAGCCCCGGACTAA 165
                      ******* ********************* ******* **********************

consensus_6724#0      CAGGAGTAGTGCGTTTGGTGAAT-GTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTC 359
consensus_6724#1      CAGGAGTAGTGCGTTTTGTGAATTGTCCTCTTTAGCTTGTCAAGGATACCAGCAGCCTTC 225
                      **************** ****** ************************************

consensus_6724#0      CTCCGCGCCCTCGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTCTCA 419
consensus_6724#1      TTCGGGGCCTTNGAAGTGCCATTCTGTGCGAGCCAGGCCAGAGAGCCATTCAGGTTNTCA 285
                       ** * *** * ******************************************** ***

consensus_6724#0      TCCTCGACGACCTCCCTAAGTTTCGTGCGGTCGTACATACAGATAGAGAAGAGCACTGCC 479
consensus_6724#1      TCCTNGACGACCTCCCTAAGTTTCGTGCGGTCGTACNNACAGATAGAGAAGAGCTC--GT 343
                      **** *******************************  **************** *    

consensus_6724#0      ACCGCATTCTCTTTGTTACGTTTGCATTGGTCATCCTTTATGATGTGGAGCATGCAAGGC 539
consensus_6724#1      ACGGGA------------------------------------------------------ 349
                      ** * *                                                      

consensus_6724#0      ACGCCACCAGTC 551
consensus_6724#1      ------------