cluster # 10

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Schistosoma mansoni
cluster # 10 cluster # 10 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10#0 length = 482 sequences # 1

consensus_10#1 length = 153 sequences # 1

consensusID : consensus_10#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATACACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATGATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAATACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATACAATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAGTCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTACACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAATT]

[+] EMBL AI975244             [TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATACACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATGATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAATACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATACAATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAGTCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTACACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAATT]




>consensus_10#0
TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATA
CACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATG
ATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAAT
ACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTAT
TTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATAC
AATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAG
TCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTA
CACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAA
TT

consensusID : consensus_10#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence

                              [AATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATACAATACGAACTAACTGTAGTAAACGACAAAAATTACAAAAGACGATTATCACAGCAGCGACAAAACAACATTTATTGCACAT]

[-] EMBL AI381054             [AATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATACAATACGAACTAACTGTAGTAAACGACAAAAATTACAAAAGACGATTATCACAGCAGCGACAAAACAACATTTATTGCACAT]




>consensus_10#1
AATCTTTATTATTTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACC
TTACACATATACAATACGAACTAACTGTAGTAAACGACAAAAATTACAAAAGACGATTAT
CACAGCAGCGACAAAACAACATTTATTGCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10#0      TAACTTCAATTTAATTTGTATCCAGAACTTTTCGATAAATAAGTGGAAAAAACACTGATA 60
consensus_10#1      ------------------------------------------------------------
                                                                                

consensus_10#0      CACTTTTATACATATTTGATTAGCAAGTACAGAATAATTGTTAACATCTTTGGCAAAATG 120
consensus_10#1      ------------------------------------------------------------
                                                                                

consensus_10#0      ATGTTTGTGGTGATGGTCATTCAAAAAGTTTGTTGGATGTAGACTGAAGATAAATGAAAT 180
consensus_10#1      ------------------------------------------------------------
                                                                                

consensus_10#0      ACGACATACGAATTAAGTTATAACAACATGGGGGATTTACACTATGAAAATCTTTATTAT 240
consensus_10#1      ------------------------------------------------AATCTTTATTAT 12
                                                                    ************

consensus_10#0      TTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTGCGCATATAC 300
consensus_10#1      TTTAAGGAGATTAAAAATAAATTAAAATGAATACTAAAAATCAAGACCTTACACATATAC 72
                    ************************************************** * *******

consensus_10#0      AATACGAACTAAACTGTTAGTGAACGAACAAAAAATTACAAAAAGAACGAATTATCACAG 360
consensus_10#1      AATACGAACTAA-CTGT-AGTAAACGA--CAAAAATTACAAAAG--ACGA-TTATCACAG 125
                    ************ **** *** *****   *************   **** *********

consensus_10#0      TCCAGACGGACAAAAACAACATATTTATTGCACTATTATAAAAAGCGTAATGCATTTTTA 420
consensus_10#1      CAGCGAC-----AAAACAACA--TTTATTGCAC-AT------------------------ 153
                        ***     *********  ********** **                        

consensus_10#0      CACGAGATCATCTAATCTAACATACGAATCANCATGGATCATGAATACTGTTTGTAGGAA 480
consensus_10#1      ------------------------------------------------------------
                                                                                

consensus_10#0      TT 482
consensus_10#1      --