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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1674 fasta sequence
[ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACTATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTACTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCAATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC-GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT-CGTTGTCCTCGTGACGAGTCTTATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACANAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCAAATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC]
[+] EMBL CD114247 [ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACTATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTACTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCAATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTAC ]
[+] EMBL CD120743 [ CACCATTTCATTATTATTATTATTATTGGCCTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCG ]
[-] EMBL CD148776 [ TAATTGTGATAATCAATTAAATCATAATGGTAATAATGGTAATGGAACNCAAATTCCTGCTATGTTTGCCAGAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCT ]
[-] EMBL CD110918 [ TAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAATTATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTATTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCT ]
[-] EMBL CD111054 [ TGTTTGCCAAAGTTCGTGAATTATTAGCACTACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAACTCCAGGCGTAATCGAAGGTATGCAACAATCGATGTACCCAATCGACTACAGACAATTGCTACTCCTCAGTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTGTCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTTTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTCTTGACTTGGGCACGTGCTAATGCATTGTCCTCATGACGAGTCa ]
[+] EMBL CD115303 [ TTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTATTAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGACAATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAAT CGTTGTCCTCGTGACGAGTCTTATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACANAATCAACAAACACAGCAACATCAACCA ]
[+] EMBL CD111067 [ GTAACCAAAGGAATGCAACAATCGATGTACCCAATCGACTACAAACAATTGCTACTCCTC GTATATCTCATGGTCAACAATCATTAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATAATAATAGTTCATCTTCTCTTAATCAACCTCCACCATGGACTGTACGCTTATGGGAAGAAGTCTGTTTATTATGGACATGTGTAGTGCTAAGACC ]
[+] EMBL CD111506 [ CTTACATCTATACATGAATTAAACGATGTAGATGATGATGTTCCTGGACAAAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGT ]
[-] EMBL CD150400 [ AGCAACATCAACCATCTTGTCAACAATCAACTCGTCCTTGTAGACGTGCTTCAGTCTTTCGTTTGCCATTTGAAGCTAGTTATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAGAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCG ]
[+] EMBL CD178748 [ TATATGTCTTGGGATGATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAACATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAACTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTCATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATG ]
[+] EMBL CD168151 [ CAAAATCACTCAACAAACATCTCTATAGATGAAAGTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAACTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGTTTATTACGTTCAGTTAAAATGAAAACTCCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCAAATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC]
[+] EMBL CD120039 [ ATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGATTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTTATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAGCATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAACGGTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGAC ]
consensusID : consensus_10015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATTGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACGTAAGTTACAGTTATTGTTGGTTATTTTCGTTTAAAAATTGTATAATTTGACA]
[-] EMBL CD120000 [CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATTGTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCATCCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTTCGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCTTCACGTAAGTTACAGTTATTGTTGGTTATTTTCGTTTAAAAATTGTATAATTTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10015#0 ATAATAACACATGTACCAATTCTTATACTTTACATGGCTTAGATTTAGCCTATAATAACT 60
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATATACCACTATCGATTGATCATTCACAATCATCATCTACTGCATCAAATAACACTACTA 120
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 CTAATCTTAATACCAACAATAATCATAATAATAATAATGATCATAACAATAATCATACCA 180
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATAATAATCGTCTTTATTATTCATCAACTTCACCATTTCATTATTATTATTATTATTGGC 240
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 CTAATTCAATAGATACACAATTTGATTCTAATTTACATAATTGTGATAATCAATTAAATC 300
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATAATGGTAATAATGGTAATGGAACACAAATTCCTGCTATGTTTGCCAAAGTTCGTGAAT 360
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TATTAGCAAAACGTGATTCAAATGGTCCACGTTTATTAAGTTTAATTACAGAAGAATTAT 420
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TAAATTGTTCTAAATTACCAGTGATAAAATCCAGGCGTAATCAAAGGAATGCAACAATCG 480
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATGTACCCAATCGACTACAAACAATTGCTACTCCTCGTATATCTCATGGTCAACAATCAT 540
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TAAATGACCGTCAATATTCTAGCGAAACATTATCAGCCAACTCGGTTAATAATGGTTATA 600
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATAATAGTTCATCTTCTCTTAATCAATCTCCACCATGGACTGTACGCTTATGGGAAGAAG 660
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TCTGTTTATTATGGACATGTGTAGTGCTAAGCCCTGATTGTAGTGTTGAAGCAAAAAGAC 720
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 AATGGCGTTATCGATTTTTGACTTGGGCACGTGCTAATCGTTGTCCTCGTGACGAGTCTT 780
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATTCAATTCCTAGTCATTTCCTTACATCTATACATGAATTAAACGATGTAGATGATGATG 840
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TTCCTGGACANAATCAACAAACACAGCAACATCAACCATCTTGTCAACAATCAACTCGTC 900
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 CTTGTAGACGTGCTTCAGTCTTTCGTTTGCCAATTGAAGCTAGTTATATGTCTTGGGATG 960
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATGTCTGGTGGAATCATCTTTCTATTCATGATACGAAATTAAATAAACACGAACATGAAC 1020
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATCGTGAAGATGCAAATGGAGGTCGACAAAATCACTCAACAAACATCTCTATAGATGAAA 1080
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 GTAGTAGTGATTGTGGCAGGATATTTCGACGACCATCTTCAATTACTCCTAGACGGTCGA 1140
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 TTGGATTCAACAACCGATCGTTTCAACCAAACTCTTCTCCAAGAGAATGTCAATGCCCTT 1200
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 ATTGTGATCATTCAGGACCACTTAATGAACCATTTCCTTTATTGTGTTTACGTGTGGCAG 1260
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 CATTGCGAAGTAATGGTTATTTAAGTCAAGCGTTACAACTTGCTGTATTTATTAGTCAAC 1320
consensus_10015#1 ------------------------------------------------------------
consensus_10015#0 GTTTATTACGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAAT- 1379
consensus_10015#1 --------CGTTCAGTTAAAATGAAAACTTCATTGGCTGCAACTTCAATTATTAATAATT 52
***************************************************
consensus_10015#0 GTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCAT 1439
consensus_10015#1 GTTCAACGTAGCCCTCCACAAACATTTTCTTCACATACATCATGGAATAATAATTGCCAT 112
************************************************************
consensus_10015#0 CCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTT 1499
consensus_10015#1 CCTAATGATATCGTAGCACGTCGTATGTTGTTCAATACACCGCCAAATGGACAAACACTT 172
************************************************************
consensus_10015#0 CGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCT 1559
consensus_10015#1 CGGGTAAATGGTATGAGTTCACATAATGTAATGCATAATTCTGGATCACGATATTTGTCT 232
************************************************************
consensus_10015#0 TCACCTAATGTGCCTCCTTCCCCGTCAATGATACCAAATCATGGGAAATTCTCTCCTTCA 1619
consensus_10015#1 TCACGTAA---GTTACAGTTATTGTTGGTTATTTTCGTTTA---AAAATTGTATAATTTG 286
**** *** * * * ** * ** * * ***** * * **
consensus_10015#0 AATCGGCTTACATCACCTAGACCAGCATCATTATCTCCACCAGTGAATGTCACTC 1674
consensus_10015#1 ACA---------------------------------------------------- 289
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||