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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 702 fasta sequence
[TGCATGACGCATGGGGAGTTGGTGCTGT-GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA-CCACCT-TTGCCAGTGTTTTTGCCAAG-AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG-TGGAAA-TCGCTGAAATTA--A--TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD078545 [TGCATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGGACAGAAAATCCTAAGTTTAATTGTATACCACAATTGATCTGATTATTTCTCANACATAANACACCATANTAGGAATT ]
[+] EMBL CD140202 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACCACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTG ]
[+] EMBL CD196269 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTAGAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCTNNTG CAGTGTTTTT ]
[+] EMBL CD140282 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGatcctgttc ]
[+] EMBL CD196258 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGG CCA CCACCT NTGCCAGTGTTTTTGCCAAGAAACA TTGGAAATCCTGCGTNCATCATAGATGCGCCGCTGGNTGGAAN TCGCTNGAATTA ANNTG AAT AGACAGCTTGCAAAGGAAAATGCTGTATTTGNTCATGNAA ]
[+] EMBL CD196325 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGG CCA CCACCT TTGCCAGTGTTTTTGCCAAGAAACA TTGGAAAATCTGCGTCAATCATAGATGCGCCGCTGGNTGG AA TCGCTGAAANTANNN TG AAT AGACAGCTTGCAAAGG AAATGCTGTA NTGNTCATGA ]
[+] EMBL CD196324 [ ATGACGCATGGGGAGTTGGTGCTGT GGTCTTTGTGCAAATTCAGGAAGTGACGAAGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTTTTTCACCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CACCT TTGCCAGTGTTTTTGCCAAG AACA TTGGAAATCCTGCGTNCATCATAGATGCGCCGCTGG TGGAAANTCGCTG AATTN A TGAAAATAGACAGC TGCAANGNAAAATGCTGTATTTGNTCnt ]
[-] EMBL CD196294 [ TGACGCAT GGGAGTT GTGCTGTNNGTCTTTGTGCAATTTCAGGAAGTGACGAAGATGAGGAGGCTGACCGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACAGCAGCCATATGGAAGTGTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCG CGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATG ]
[-] EMBL CD073012 [ GGGACACAGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGNTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTA ]
[-] EMBL AI395704 [ AAGT GTTGATGCTTGAGCAACAGATTACAATCCCTTAGATTCACAAGAACATAGTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCA CCACCT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCGCTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395269 [ aggCAGA TACATTTCCCTAGATTCACANGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCANCCA CT TTGCCAGTGTTTTTGCCAAG AACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGG TGGAAA TCACTGAAATTA A TGAAATAAGACAGCTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATTTTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAACATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_10018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[GGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGTTGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAAGTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATTTTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATGCTGTA]
[+] EMBL CD154416 [GGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGTTGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAAGTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATTTTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATGCTGTA]
consensusID : consensus_10018#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence
[TTTTTTTTTTTTTTTTTTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATTT]
[+] EMBL AI395400 [TTTTTTTTTTTTTTTTTTTGCAAAGGAAAATGCTGTATTTGTTCATGAAATGACAACACAAGAAAAGGATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTTTACAAGCTTCTCTTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10018#0 TGCATGACGCATGGGGAGTTGGTGCTGTGGTCTTTGTGCAAATTCAGGAAGTGACGAAGA 60
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 ------------------------------------------------------------
consensus_10018#0 TGAGGAGGCTGAACGTCAGAGACTAATTCCAAGCCCTCAGCTTTCATACGATGGGACACA 120
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 ------------------------------------------------------------
consensus_10018#0 GCAGCCATATGGAAGTTTTTCATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATAT 180
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 ------------------------------------------------------------
consensus_10018#0 TAATACTATGATGACAAATATAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGC 240
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 ---------------------------------------------GGAGTTGGTGCTGTG 15
consensus_10018#0 AACAGATTACAATCCCCTAGATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGA 300
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 GTCTTTGTGCAAATTCAGGAAGTGACGAACTCCTGAAGTGCCCGAATGACGTACTACTGT 75
consensus_10018#0 AAGCATAGCTCGACAGCCTTTAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATT 360
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 TGAGAAGAGGAGCGAAAAATATTCAGTCTTATGAACACTTCAATAACAACAGTGTTTAAA 135
consensus_10018#0 TGGAAATCCTGCGTCAATCATAGATGCGCCGCTGGTGGAAATCGCTGAAATTAATGAAAT 420
consensus_10018#2 ---------------------------------------------------TTTTTTTTT 9
consensus_10018#1 GTGGATTTACAACCACGAACTACAGTATTTCGCTTCGTAGTTGATTGATACATGCCTATT 195
*
consensus_10018#0 AAGACAGCTTGCAAAGGAAAATGCTGT-ATTTGTTCATGAAATGACAACACAAGAAAAGG 479
consensus_10018#2 TTTTTTTTTTGCAAAGGAAAATGCTGT-ATTTGTTCATGAAATGACAACACAAGAAAAGG 68
consensus_10018#1 TTGCTAGTAGAGAAAGGAAGATCATGTGATTTATTGATGAGGAGGCTGAACGTCAGA-GA 254
******* ** *** **** ** **** * * ** * * *
consensus_10018#0 ATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTT-TACAAGCTTCTC 538
consensus_10018#2 ATGATCTCATTGCCCACTTCAATCAAGCATAGAGATAAAGAAAACTT-TACAAGCTTCTC 127
consensus_10018#1 CTAATTCCAA-GCCCTCAGCTTTCATACGATGGGACACGGCAGCCATATGGAAGTTTTTC 313
* ** ** **** * * *** * * ** * * * * * * *** ** **
consensus_10018#0 TTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCTAATT 598
consensus_10018#2 TTCGAAAGTATATGCTTCCAATATCTACCAGACTATTTTATCTTTTATATATTTCCAATT 187
consensus_10018#1 ATCTCCAGATCCTGTTACAAATGAACCTCAGTCAGATATTAATACTATG-ATGACAAATA 372
** ** ** * * *** *** * * * * *** ** * ***
consensus_10018#0 TTTGTACAGAAAATCCTAAGTTTAATTGTATACAACAATTGATCTGATTATTTCTCAAAC 658
consensus_10018#2 T----------------------------------------------------------- 188
consensus_10018#1 TAATAAAAGTTGCTGAAAATCAAGTGGTGGATGCTGGAGCAACAGATTACAATCCCCTAG 432
*
consensus_10018#0 ATAAAACACAATAATAGAAATTAAAAAAAAAAAAAAAAAAAAAA---------------- 702
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 ATTCACAAGAACATATTGAACGGTCAAGATACTACGCAGAAAGCATAGCTCGACAGCCTT 492
consensus_10018#0 ------------------------------------------------------------
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 TAGGCCCACCACCTTTGCCAGTGTTTTTGCCAAGAACATTTGGAAATCCTGCGTCAATCA 552
consensus_10018#0 ------------------------------------------------------------
consensus_10018#2 ------------------------------------------------------------
consensus_10018#1 TAGATGCGCCGCTGGGTGGAATCGCTGAAATAAATGAATAGACAGCTTGCANAGGANATG 612
consensus_10018#0 -----
consensus_10018#2 -----
consensus_10018#1 CTGTA 617
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||