cluster # 10027

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Schistosoma mansoni
cluster # 10027 cluster # 10027 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10027#0 length = 613 sequences # 12

consensus_10027#1 length = 117 sequences # 1

consensusID : consensus_10027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 613
fasta sequence

                              [AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC-TTTTATATTAAACAGTTCTAGCGTAGTTTGA-TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNGACCTTCTTCAATA]

[+] EMBL CD066427             [AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTACAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCCAAAATATTTTACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGAATGTACTAATAAA                                                                                                                                                                                                                                                   ]
[+] EMBL CD066491             [                         tgAAGATCTTTTTGATAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTGCTGGTACATCTGACTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD067115             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATCGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGATCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGACTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTGGAATTCAAAATAACAAATGGTCCAGGTAGATAATTTAAACTTT                                                                                                                                                                 ]
[+] EMBL CD066777             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTNTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAAT                                                                                                                                                                          ]
[+] EMBL CD066677             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCANGTAGATAAT                                                                                                                                                                          ]
[+] EMBL CD066690             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGT                                                                                                                                                                                       ]
[+] EMBL CD067306             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTCTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCCTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATGAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAA                                                                                                                                                                                                    ]
[+] EMBL CD066709             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTACATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAtt                                                                                                                                                                                                                             ]
[+] EMBL CD067118             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGTCAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD066827             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATCGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTCATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGAATTCA                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD066339             [                                        TAACCAGGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTGTCCTGGTACATCTGACTTGACAGCATGTTCAAC TTTTATATTAAACAGTTCTAGCGTAGTTTGA TCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCAT                                                                 ]
[-] EMBL CD201606             [                                                                                                                                                 TGTTCAACTTTTTATATTAAACAGTTCTAGCGTAG TTGATTCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCATAAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATCCTTTATCAATAAACCATTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATGTACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGATAACAAATGGTTCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGATATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGTTGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNGACCTTCTTCAATA]




>consensus_10027#0
AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCAGGTGCACATTTCTC
ACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTG
TCCTGGTACATCTGACTTGACAGCATGTTCAACTTTTATATTAAACAGTTCTAGCGTAGT
TTGATCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCAT
AAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCA
TTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATG
TACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGAT
AACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGAT
ATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGT
TGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNG
ACCTTCTTCAATA

consensusID : consensus_10027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [CAAGGTGGGGGTAGGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTGTCCTGGTACATA]

[+] EMBL CD066675             [CAAGGTGGGGGTAGGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTGTCCTGGTACATA]




>consensus_10027#1
CAAGGTGGGGGTAGGATCTTTTTGATAACCACGTGCACATTTCTCACATGATAAACCTTC
ATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTGTCCTGGTACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10027#0      AATTCTCCCTTTGGCGGGGTGGAAATCAAGATCTTTTTGATAACCAGGTGCACATTTCTC 60
consensus_10027#1      --------------CAAGGTGGGGGT-AGGATCTTTTTGATAACCACGTGCACATTTCTC 45
                                     *  *****   * * ***************** *************

consensus_10027#0      ACATGATAAACCTTCATAACCATTTGGACATGTACATTCTTCAATTTCTCCTACCCATTG 120
consensus_10027#1      ACATGATAAACCTTCATAACCATTTGCACATGTACATTCTTCAATTTCTGCTACCCATTG 105
                       ************************** ********************** **********

consensus_10027#0      TCCTGGTACATCTGACTTGACAGCATGTTCAACTTTTATATTAAACAGTTCTAGCGTAGT 180
consensus_10027#1      TCCTGGTACATA------------------------------------------------ 117
                       ***********                                                 

consensus_10027#0      TTGATCTCGAAAATATTTCACTCGGAAACCAATCTTTTTGATATCACTTATAATTTGCAT 240
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      AAAACCAGCACGACCAATAGTTTGATCAATTTTTTGTTTACATTCTTTATCAATAAACCA 300
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      TTTATCACGTTCAGAAAGTCTTATATGTATTCGATTATCATATCCAGTTGGTATAGTATG 360
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      TACTAATAAACGATCATTTGGTGGACACCAATAAATCGATTGATCTGTTGAATTCAAGAT 420
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      AACAAATGGTCCAGGTAGATAATTTAAACTTTCACCAAATAGACGAAGATTTATTATGAT 480
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      ATCATATCCATAAGATTTTACCCATGAACCTGAAAGATTAAAATCACTTTCAATAAATGT 540
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      TGATTCATTAGGAACATCAGGTATACGTAGTATATCTCCGTCGATTTCAGTTATTCCNNG 600
consensus_10027#1      ------------------------------------------------------------
                                                                                   

consensus_10027#0      ACCTTCTTCAATA 613
consensus_10027#1      -------------