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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 708 fasta sequence
[TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA-TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT-CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]
[+] EMBL CD113515 [TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAGAACTTGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTC ]
[-] EMBL CD113585 [ GCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACGTAACTTTTGGAGAATTGTTCTACATGAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTCTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCTTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATGCATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCC ]
[+] EMBL CD111482 [ GTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGGAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAG ]
[+] EMBL CD186213 [ TTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTT ]
[+] EMBL BF936051 [ TTGAGCAC CTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTC ]
[-] EMBL CD128969 [ TGAGCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATTATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCA GTTTGCCAGTCGGTTAAACA ]
[+] EMBL CD130484 [ GCACGTACGCTAGCTTATTATTCAATCTGAAGTGGGTAAAAAAATTCGATTGAGTACCATAGTAAACCTAACTTTTGGAGAATCGTGCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGNAAACTGACCCTTCTGATAATCCAG AAATACCGATCCCATTGAANCAGC GCTGAAANTGC TTATGGACTAATACATTCTAGATACATTCTGACAAATCCGT GTATTTNGTTTATGnt ]
[-] EMBL CD128875 [ AACCTAACTTTTGGAGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTTGCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCA ]
[+] EMBL CD134934 [ CCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCATCAAGGGGATTTTGGTTATTGTCCCAGAGTATACTGTGAAAGCCAGCCGTGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA ]
[-] EMBL CD186913 [ TCTCATTGAACAAGCGGCTGAAA TGCTTTATGGACTAATACATTCTAGATACATTCTGACAAAT CGTGGTATTTGTTTTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATACTGTGAAAGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACTCCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTC ]
[-] EMBL CD130059 [ CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]
[-] EMBL CD130096 [ CCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATATATTGTCCTAGATGTCAAGATACCTATACACCGAAATCTACTCGTCATCATCATACAGATGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAGACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA]
consensusID : consensus_10069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA]
[+] EMBL CD084114 [TCGGCACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTTACTGCAAGACTGTTCGGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTATGTTATGCCTGTACGCCCTGGTTTTTCAAAACGTGCATAAAATTATAAAAAAGGACTTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATTTGTACTGTTGTTATTGTTTTTTTTTCTCCACATCTTTTGTGAATTCATCAATTAAAAAGAGAAATATTATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10069#0 TGCGTACTTTAAGTTTCCCTCGAAGTCGCGGTTGGGCTTTGAGCACGTACGCTAGCTTAT 60
consensus_10069#1 ------------------------------------------------------------
consensus_10069#0 TATTCAATCTGAAGTGGGTAAAAAAAATCGATTGAGTACCATAGTAAACCTAACTTTTGG 120
consensus_10069#1 ------------------------------------------------------------
consensus_10069#0 AGAATTGTTCTACATAAAACATGAGTAGCAGTGATGAAATATCTTGGATATCATGGTTTT 180
consensus_10069#1 ------------------------------------------------------------
consensus_10069#0 GCGGCCTACGTGGAAATGAATTCTTTTGTGAAGTTGAGGAGGACTACATCCAGGACCGAT 240
consensus_10069#1 ------------------------------------------------------------
consensus_10069#0 TCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATAC 300
consensus_10069#1 ------------------------------------------------------------
consensus_10069#0 TTGATTTGGAAACTGACCCTTCTGATAATCCAGAAAATACCGATCTCATTGAACAAGCGG 360
consensus_10069#1 --------------------------------------------------------TCGG 4
***
consensus_10069#0 CTGAAATGCTTTATGGACTAATACATTCTAGATACATTCTGACAAATCGTGGTATTTGTT 420
consensus_10069#1 CACGAGGAGAGTACAGACCAAAACGAGCTAGTAACAGTTT-----ACTGCAAGACT-GTT 58
* * ** *** ** ** **** *** * * * * * * ***
consensus_10069#0 TTATGGTGGCAAAATGGCAGCAAGGGGATTTTGGTTATTGTCCTAGAGTATA-CTGTGAA 479
consensus_10069#1 C---GGCTTTAAAATACATCCTTTGGCTTATCAACTACAATATCAAGCCGCGGCTAATTA 115
** ***** * ** * * ** * * ** *
consensus_10069#0 AGCCAGCCATGTTTGCCAGTCGGTTTATCAGATGTTCCTGGTGAAGCTATGGTTAAGATA 539
consensus_10069#1 TGTTATGCCTGTACGCC--CTGGTTTTTCAAAACGTGC--ATAAAATTATAAAAAAGGAC 171
* * * *** *** ***** *** * * * * ** *** ***
consensus_10069#0 TATTGTCCTAGATGTCAAGATACCTATAC-ACCGAAATCTACTCGTCATCATCATACAGA 598
consensus_10069#1 TTTACTGTTGATTGTTGTAAATCACGTCTGATTTAAGCGTGGTGGAAACTAATACTTATT 231
* * * * *** * * * * ** * * * * * * *
consensus_10069#0 TGGAGCGTATTTCGGTACTGGCTTTCCGCATATGCTGTTTTTAGTTCATCCAGAGTACAG 658
consensus_10069#1 TGTACTGTTGTTATTGTTTTTTTTTCTCCACAT-CTTTTGTGAATTCATCAATTAAAAAG 290
** * ** ** * **** ** ** ** ** * * ****** * * **
consensus_10069#0 ACCAAAACGAGCTAGTAAACAGTTTACTGCAAGACTGTTCGGCTTTAAAA 708
consensus_10069#1 AGAAATATTATTTGA----------------------------------- 305
* ** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||