|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 976 fasta sequence
[GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT-AAGTAATAATATTTAGAAATAACGTCTACACTGG-TG-TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT-AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA]
[-] EMBL CD117475 [GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATA ]
[+] EMBL CD201974 [ GTATGTGATAGTTACAGGACAAGTTAATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTTTTTATTTCATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTATTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGAGTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGNGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAANAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGG AAAACANAACAACCCATCCTCTAATATTACTCAGTGAATAAAAGAATGAAACAACTCANAGTCTGAATTAATAAAGT ATAATATTTAGAAATAACGTCTACACTGGNTG TAACGATAATGATGANTATAATAAATAACGGCTGTTTGTAAGCGCGCACATAATCTTT ATAAATAAAAACGGTAGACNATAAAGAAAT CGAGCCCTCTAAAACGAAACAATAATGGTact ]
[-] EMBL CD117385 [ ATTAGTACTATTAGGAAAAGAGGCAAAGCAGTTGTCAACCAATCAGAAGACAAGTCTGAATGGAACAGAGCAACAAACAAAAAACAAGAACTTATGTTTGTTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATA ]
[+] EMBL CD098468 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTCTACACTGG TGTTAACGATAATGATGATNATAATAGATAACGGCTGTTTGTAGGCGCGCACATt ]
[+] EMBL CD098422 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAAACAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTCATAATATTTAGAAATAACGTC ]
[+] EMBL CD111213 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTC ]
[+] EMBL CD111312 [ AAAGCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACTGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAGTGAAAATAAGAAACAGGATAC ]
[+] EMBL CD168990 [ GTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAAGAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGGGTAATAGTGAACATGATGTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAATTGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAACAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTACTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAAT AAGTAATAATATTTAGAAATAACGTCTACACTGG TGTTAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGAtttctt ]
[+] EMBL CD119546 [ TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA]
[+] EMBL CD119382 [ TAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAAT AAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGA]
consensusID : consensus_10072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence
[TTAACGGTAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTATGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGTGAAATTCTGAGTAGTTTCAATAGTGGTATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAGAAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATAATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACTATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCTACTTATTGAATAACAA]
[+] EMBL CD184222 [TTAACGGTAATGATGATAATAATAAATAACGGCTGTTTGTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCTCTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAGAATCTGTAGGACAAACCGTATGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGAT ]
[+] EMBL CD067144 [ GGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGATAATAACAAGTACTTACATTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGTGAAATTCTGAGTAGTTTCAATAGTGGTATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAGAAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATAATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACTATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCTACTTATTGAATAACAA]
consensusID : consensus_10072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence
[GGACAAACCGTCGGAGTGAATACAGACAGAGATACAGATGATGGTAACAGGTACTTACTTTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGCGAAATTTTGAGTAGTTATATTATTGACATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATG]
[+] EMBL CD067145 [GGACAAACCGTCGGAGTGAATACAGACAGAGATACAGATGATGGTAACAGGTACTTACTTTTGAACCACTATAGAATAAAACTGATGTGGCAATAAAGATTTGTGTTGCGAAATTTTGAGTAGTTATATTATTGACATTCGTAGTAGTAGTGGTGGTAACTTTAGTTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10072#1 ------------------------------------------------------------
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 GGGGACAGACAGAAAATTGTATATAAGTTGGTTGTGTATGTGATAGTTACAGGACAAGTT 60
consensus_10072#1 ----------------------TTAACGGTAATGATGATAATAATAAATAACGGCTGTTT 38
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 AATTTAAAACGTTCATTGAATAAAATCTAAACAGGATATGCCATTTACCAATGGTCTTTT 120
consensus_10072#1 GTAGGCGCGCACATAATCTTTAATAAATAAAACGGGTATACAATAAGAAATCCGAGCCCT 98
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 TTTATTACATATCAAACAACAAGGAAATAATTACGATAACAATAATGAGAATGAAATTTA 180
consensus_10072#1 CTAAAACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGA 158
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 TTGATAGCTAACAAACACATGGGTGGCAACAATAATAATCACAATGGTGGGAGTACAGGA 240
consensus_10072#1 TAGTAGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCA 218
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 GTAGTGAGGGTTTCAACCTCTACTACTATTACTATTACTACTACTAGGAAAAGAGGCAAA 300
consensus_10072#1 GAAGAATCTGTAGGA-CAAACCGTATGAATGAAT---ACAGAGAGAGAGAGAGATGATAA 274
consensus_10072#2 ------------GGA-CAAACCGTCGGAGTGAAT---ACAGACAGAGATACAGATGATGG 44
consensus_10072#0 GCAGTTGTCAACCAATCAGAAGACAAGACTGAATGGAACAGAACAACAAACAAAAAACAA 360
* ** * ** ***** ***** * * * * * *
consensus_10072#1 TAACAAGTACTTACATT-TGAACCACTATAGAATAAAACTGATGTGGCAATAAA---GAT 330
consensus_10072#2 TAACAGGTACTTACTTT-TGAACCACTATAGAATAAAACTGATGTGGCAATAAA---GAT 100
consensus_10072#0 GAACTTATGTTTGCTCAATGAAGTAACAAAAGAGAAAATTGG-GTAATAGTGAACATGAT 419
*** * ** * **** * * * * **** ** ** * * ** ***
consensus_10072#1 TTGTGTTGTGAAAT--------TCTGAGTAGTTTCAATAGTGGT----ATTCGTAGTAGT 378
consensus_10072#2 TTGTGTTGCGAAAT--------TTTGAGTAGTTATATTATTGAC----ATTCGTAGTAGT 148
consensus_10072#0 GTATATTTATACATGTACACCTCTTGGTCAATTTGAAAAATGTCTATAATTGATAATAAT 479
* * ** * ** ** * ** * * ** *** ** ** *
consensus_10072#1 AG-TGGTGGTAACTTTAGTTATGTTTACGTGGAAATAGGGATATGGAGTGGGACTAAAAG 437
consensus_10072#2 AG-TGGTGGTAACTTTAGTTATG------------------------------------- 170
consensus_10072#0 TGACGGTGGACAGCAGTGTCGAGTGTTGGTTCAATGGATAAAAAGAATGAAAATAAGAAA 539
* ***** * ** *
consensus_10072#1 AAAACACATGCTAAAAAAGTGATTTTCATAATGTTATCCCAAAAAGGTCATTGAATAATA 497
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 CAGGATACAAATATTAAACCACCAAAAAGGAAAAACAAAACAACCAATCCTCTAATATTA 599
consensus_10072#1 ATCTAACAAATAGAAATAACACACACATAGATGTATATATATACACAAATATAAGTGACT 557
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 CTCAGTGAATAAAAGAATGAACAAACTCAAAGTCTGAATTAATAAGTAATAATATTTAGA 659
consensus_10072#1 ATCACGATGTACAGTTCATTTATATTAATGATAACAGTATGAAATAATATTAAATTACCT 617
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 AATAACGTCTACACTGGTGTAACGATAATGATGATAATAATAAATAACGGCTGTTTGTAG 719
consensus_10072#1 ACTTATTGAATAACAA-------------------------------------------- 633
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 GCGCGCACATAATCTTTAATAAATAAAACGGGTAGACAATAAGAAATCCGAGCCCTCTAA 779
consensus_10072#1 ------------------------------------------------------------
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 AACGAAACAAATATGGTTACATAAATATATTGGCATATTATATCTGTTACATTTGATAGT 839
consensus_10072#1 ------------------------------------------------------------
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 AGAATCTAGAGGTGTGTGGACCAGAGAAGAACAGAATAAGTTGACGGTAGAATTCAGAAG 899
consensus_10072#1 ------------------------------------------------------------
consensus_10072#2 ------------------------------------------------------------
consensus_10072#0 AATCTGTAGGACAAACCGTAGGAATGAATACAGAGAGAGAGAGAGATGTGAGCGAGCGAG 959
consensus_10072#1 -----------------
consensus_10072#2 -----------------
consensus_10072#0 TGTATTTTTGAATTGGA 976
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||